New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	222	1 =	0 (0.000)	71 (0.040)	52/200	0.1	97.3%	intergenic (–/–)	–/–	–/–
	?	59	= 12103	4 (0.070)					intergenic (–/–)	–/–	–/–

GTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  222/98‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGTGCGTCATCTGGACGGTGATGATT  <  59/12103‑12004                                                                                                                                                                                                        GTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAAC                                                                                                   >  2:787024/1‑101   GATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTG                                                                                                 >  2:1373525/1‑101    ATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGC                                                                                                >  2:930014/1‑101    ATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGC                                                                                                >  2:1614878/1‑101    ATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGC                                                                                                <  1:1536648/101‑1     TTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCA                                                                                               >  2:399795/1‑101      TCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCAT                                                                                              <  1:1454564/101‑1        ACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCA                                                                                            <  1:585294/101‑1        ACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCA                                                                                            <  1:787029/101‑1        ACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCA                                                                                            <  2:370327/101‑1          GACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATC                                                                                          <  1:1495395/101‑1          GACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATC                                                                                          <  1:1213009/101‑1            CTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGA                                                                                        >  2:917869/1‑101                     GCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGT                                                                               <  2:834362/101‑1                         TTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGC                                                                           >  2:1341860/1‑101                         TTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGC                                                                           <  2:921088/101‑1                         TTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGC                                                                           <  2:72259/101‑1                           CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGC                                                                         >  1:246648/1‑101                            AAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCT                                                                        >  1:542199/1‑101                               AGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTAT                                                                     <  1:861799/101‑1                               AGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTAT                                                                     <  1:930019/101‑1                               AGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTAT                                                                     <  1:1373531/101‑1                               AGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTAT                                                                     <  1:186604/101‑1                               AGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTAT                                                                     <  2:499834/101‑1                                 GGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGA                                                                   >  1:1431893/1‑101                                 GGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGA                                                                   <  1:743331/101‑1                                 GGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGA                                                                   <  1:1688585/101‑1                                  GTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGAC                                                                  >  1:1316009/1‑101                                   TATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCCCTTATGACG                                                                 >  2:1202599/1‑101                                        TGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGT                                                            <  1:216619/101‑1                                          GCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTAT                                                          >  2:1184320/1‑101                                          GCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTAT                                                          >  1:883853/1‑101                                            TTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCT                                                        <  2:825498/101‑1                                              TGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGG                                                      <  2:716053/101‑1                                                ACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGAC                                                    >  2:1621415/1‑101                                                 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACC                                                   <  1:1341866/101‑1                                                  ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCC                                                  >  1:1522012/1‑101                                                   TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCG                                                 <  2:384593/101‑1                                                   TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCG                                                 <  1:488927/101‑1                                                    ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGC                                                >  1:1616171/1‑101                                                           GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTG                                         >  1:1409559/1‑101                                                           GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTG                                         <  2:542194/101‑1                                                            CTATTCCATTTCATCGTCCAACAAAATGGGGGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGT                                        >  1:261765/1‑101                                                              ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTG                                      <  2:956175/101‑1                                                               TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGG                                     >  1:1293656/1‑101                                                               TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGG                                     <  1:100964/101‑1                                                                  CATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTG                                  >  1:868227/1‑101                                                                  CATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTG                                  <  1:399800/101‑1                                                                   ATTTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGG                                 >  2:189833/1‑101                                                                     TTCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCC                               >  1:1679543/1‑101                                                                      TCATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGGTGGCCg                              >  2:825540/1‑100                                                                        ATCGTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGG                            >  2:1299812/1‑101                                                                           GTCCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGT                         >  1:1495039/1‑101                                                                             CCAACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGTGC                       >  1:1558984/1‑101                                                                               AACAAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGTGCGT                     <  2:964163/101‑1                                                                                  AAACTGGGGGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGACTGGCGTGCGTCAT                  >  2:1613648/1‑101                                                                                  AAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGTGCGTCAT                  >  2:1309465/1‑101                                                                                  AAAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGTGCGTCAT                  <  1:1614884/101‑1                                                                                   AAATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGTGCGTCATC                 >  1:501052/1‑101                                                                                    AATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGTGCGTCATCT                >  1:403542/1‑101                                                                                    AATGGGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGTGCGTCATCT                <  1:1184325/101‑1                                                                                        GGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGTGCGTCATCTGGAC            <  1:1620063/101‑1                                                                                        GGTGCAGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGTGCGTCATCTGGAC            <  1:917874/101‑1                                                                                             AGTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGTGCGTCATCTGGACGGTGA       >  2:1336256/1‑101                                                                                              agACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGTGCGTCATCTGGACGGTGAT      >  1:1202982/3‑101                                                                                              GTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCGGCAGCATTGTTGGCTGGCCTGGAGTGGGTCATCTGGACGGTGAg      >  2:1451436/1‑100                                                                                              GTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGTGCGTCATCTGGACGGTGAT      >  1:1462725/1‑101                                                                                              GTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGTGCGTCATCTGGACGGTGAT      >  2:641858/1‑101                                                                                              GTACAAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGTGCGTCATCTGGACGGTGAT      >  2:432260/1‑101                                                                                                  AAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGTGCGTCATCTGGACGGTGATGATT  <  2:868222/101‑1                                                                                                  AAACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGTGCGTCATCTGGACGGTGATGATT  <  2:1363988/101‑1                                                                                                                                                                                                        GTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  222/98‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACTGCATCATCGACCCAACCGTAGGCGCTTATGACGATCGTATCTGGACCCGCAGCATTGTTGGCTGGCCTGGCGTGCGTCATCTGGACGGTGATGATT  <  59/12103‑12004

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.