New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	222	1 =	0 (0.000)	70 (0.040)	58/200	0.1	97.2%	intergenic (–/–)	–/–	–/–
	?	52	27918 =	4 (0.070)					intergenic (–/–)	–/–	–/–

AGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  222/99‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCAAGGAGAAAGGCTATGAAGCACAAC  >  52/27918‑28017                                                                                                                                                                                                         AGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAC                                                                                                    >  1:64776/1‑101  GTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACC                                                                                                   <  1:1684847/101‑1       TCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATAT                                                                                              >  1:132194/1‑101         ACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTT                                                                                            <  2:1275274/101‑1          CGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTC                                                                                           <  1:403131/101‑1           GACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCT                                                                                          <  1:222657/101‑1           GACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCT                                                                                          >  1:785922/1‑101               TCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCA                                                                                      >  2:573307/1‑101                CAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAA                                                                                     >  2:542623/1‑101                  AGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACC                                                                                   >  1:396812/1‑101                  AGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACC                                                                                   <  2:666770/101‑1                     CGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAG                                                                                <  2:1576618/101‑1                       CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGC                                                                              >  2:1462866/1‑101                          TTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAA                                                                           <  2:298966/101‑1                             AAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGA                                                                        >  2:1634907/1‑101                              AAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAA                                                                       >  1:1266556/1‑101                               AAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAAT                                                                      >  1:860080/1‑101                               AAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAAT                                                                      <  1:1710974/101‑1                                  GGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAA                                                                   >  1:296676/1‑101                                   GTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAAC                                                                  >  1:528993/1‑101                                      TTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTA                                                               >  2:992310/1‑101                                      TTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTA                                                               <  1:1044863/101‑1                                        TTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGC                                                             >  1:1707773/1‑101                                          GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAA                                                           <  1:1150802/101‑1                                          GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAA                                                           >  2:243151/1‑101                                            CTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATT                                                         >  1:189433/1‑101                                            CTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATT                                                         >  1:408274/1‑101                                            CTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATT                                                         >  2:923718/1‑101                                            CTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATT                                                         <  2:396807/101‑1                                              TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCA                                                       <  2:1702490/101‑1                                                GACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGA                                                     >  1:1620359/1‑101                                                   ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCT                                                  >  2:592090/1‑101                                                   ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCT                                                  >  1:125326/1‑101                                                   ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCT                                                  <  2:860075/101‑1                                                    TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTT                                                 <  1:1405576/101‑1                                                        AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCC                                             >  1:952411/1‑101                                                        AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCC                                             >  2:46648/1‑101                                                         GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCT                                            >  1:426785/1‑101                                                         GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCT                                            <  2:334009/101‑1                                                         GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCT                                            <  1:1071604/101‑1                                                             CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTA                                        >  1:621932/1‑101                                                             CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTA                                        <  1:1462872/101‑1                                                               ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACC                                      >  1:401797/1‑101                                                               ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACC                                      >  1:1453484/1‑101                                                                TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCC                                     >  2:1189436/1‑101                                                                    ATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCA                                 >  2:1126809/1‑101                                                                    ATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCA                                 <  1:948233/101‑1                                                                    ATTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCA                                 >  2:1223176/1‑101                                                                     TTTCATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCAT                                >  1:528695/1‑101                                                                         ATCGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGG                            <  1:1011269/101‑1                                                                           CGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCA                          >  2:1676314/1‑101                                                                           CGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCA                          >  2:1192439/1‑101                                                                           CGTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCA                          >  1:96157/1‑101                                                                            GTCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCAA                         <  1:1136753/101‑1                                                                             TCCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCAAG                        <  1:992315/101‑1                                                                              CCAACAAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCAAGG                       >  1:12332/1‑101                                                                              CCAACAAAATGGGGGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCAAGG                       >  2:4289/1‑101                                                                                   AAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCAAGGAGAAA                  <  2:528988/101‑1                                                                                   AAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCAAGGAGAAA                  >  1:572994/1‑101                                                                                   AAAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCAAGGAGAAA                  >  2:1672447/1‑101                                                                                    AAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAATGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGGCATCCGGCAAGGAGAAAG                 >  2:918856/1‑101                                                                                    AAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCAAGGAGAAAG                 <  1:592095/101‑1                                                                                    AAATGGGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCAAGGAGAAAG                 <  1:1053603/101‑1                                                                                         GGTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCAAGGAGAAAGGCTAT            <  1:136374/101‑1                                                                                          GTGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCAAGGAGAAAGGCTATG           <  2:471471/101‑1                                                                                           TGCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCAAGGAGAAAGGCTATGA          <  2:96157/101‑1                                                                                            GCAGTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCAAGGAGAAAGGCTATGAA         <  1:1634913/101‑1                                                                                               GTACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCAAGGAGAAAGGCTATGAAGCA      <  2:1031730/101‑1                                                                                                 ACAACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCAAGGAGAAAGGCTATGAAGCACA    <  2:272736/101‑1                                                                                                   AACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCAAGGAGAAAGGCTATGAAGCACAAC  >  1:207799/1‑101                                                                                                                                                                                                         AGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  222/99‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCGATATTTCTATCAACCGAGGCCAACGAATGAACCTAGCAATTCAGATCTTAGCCTCTTACCCGCCATCCGGCAAGGAGAAAGGCTATGAAGCACAAC  >  52/27918‑28017

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.