| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 22 | 6110 = | 2 (0.030) | 63 (0.040) | 49/200 | 0.2 | 98.4% | intergenic (–/–) | –/– | –/– |
| ? | 222 | = 1443 | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
ATACAGCCAGATATTCAGCGCAATGGTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < 22/6208‑6110‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATT < 222/1443‑1348 ATACAGCCAGATATTCAGCGCAATGGTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTG > 1:1669142/1‑101ATACAGCCAGATATTCAGCGCAATGGTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTG > 1:480535/1‑101 ACAGCCAGATATTCAGCGCAATGGTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTA < 2:122273/101‑1 ttccgatcTATTCAGCGCAATGGTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTAC < 2:993837/93‑1 AGCCAGATATTCAGCGCAATGGTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACT < 2:282810/101‑1 GCCAGATATTCAGCGCAATGGTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTG < 2:558245/101‑1 ATATTCAGCGCAATGGTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCC > 2:1255003/1‑101 ATATTCAGCGCAATGGTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCC < 1:1428324/101‑1 ATATTCAGCGCAATGGTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCC > 2:643541/1‑101 ATTCAGCGCAATGGTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACAGAtcggaa > 1:993842/1‑95 TTCAGCGCAATGGTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAA > 2:1313693/1‑101 GCGCAATGGTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGT < 1:61893/101‑1 ATGGTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGAC > 1:973454/1‑101 ATGGTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGAC < 1:221673/101‑1 ATGGTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGAC < 2:1612443/101‑1 ATGGTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATAGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGAC > 2:351834/1‑101 GTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCATCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGT > 2:1224807/1‑101 GTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGT < 2:297009/101‑1 GCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTA < 1:1255008/101‑1 CCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAA > 2:930368/1‑101 AAGCAGCACCACGCGCACCAGACGGGTATGATTGAGCGCCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTTCTGACCCCAAAAAGTTGGACAGTTAAAC < 2:588747/101‑1 AGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA > 2:1068319/1‑101 GCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC < 1:332859/101‑1 AGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA > 1:1527859/1‑101 AGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA > 1:1041836/1‑101 AGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA > 2:1118978/1‑101 GCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG < 1:1199667/101‑1 CACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG < 1:1352381/101‑1 ACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGC > 1:1468587/1‑101 CCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA < 2:709877/101‑1 CCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA < 1:382063/101‑1 ACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA > 1:681206/1‑101 ACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA < 1:1230959/101‑1 CCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG > 2:1028868/1‑101 CACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT > 1:880530/1‑101 ccggcCGGGTATAATTGAGCACCCATTTCAGGGCTTTGCGGT‑GGCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTG < 1:717079/96‑1 ATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATA > 2:417003/1‑101 ATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATA < 1:930373/101‑1 AGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATT > 1:193792/1‑101 CACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGG < 2:1669136/101‑1 ACCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGA > 2:323359/1‑101 cctATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAG > 1:277237/4‑101 CCCATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAG < 2:480530/101‑1 CCCATTTCAGTGACTTGCCGTAGCCTTGTTGGGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAG < 1:775360/101‑1 ATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCA > 2:1179346/1‑101 ATTTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCA > 2:1138069/1‑101 TTCAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGA > 2:1268517/1‑101 CAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACC > 1:481599/1‑101 CAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACC < 1:782427/101‑1 CAGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACC > 1:1066133/1‑101 AGTGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCT > 1:1089650/1‑101 TGACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTT < 1:697965/101‑1 GACTTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTT > 2:1351324/1‑101 TTGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAAT > 1:457137/1‑101 TGCCGTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATT < 1:36387/101‑1 GTAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAG < 2:277237/101‑1 TAGCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGG > 2:722317/1‑101 GCCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCT < 1:228025/101‑1 CCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTA > 1:1033606/1‑101 CCTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTA > 2:97081/1‑101 CTTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAA > 1:1624921/1‑101 TTGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAAT < 2:1071660/101‑1 TGTTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATT > 2:1189143/1‑101 ATACAGCCAGATATTCAGCGCAATGGTGCCAAGCAGCACCACGCCCACCAGACGGGTATGATTGAGCACCCATTTCAGTGACTTGCCGTAGCCTTGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < 22/6208‑6110‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATT < 222/1443‑1348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |