New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	196	1 =	0 (0.000)	35 (0.620)	28/198	1.1	44.0%	intergenic (–/–)	–/–	–/–
	?	91	= 8411	89 (1.470)					intergenic (–/–)	–/–	–/–

CTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  196/83‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATA  <  91/8411‑8344                                                                                                                                                         CTTATGGGCGGCAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCC                                                    >  1:1492632/1‑101  TTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCT                                                   >  1:1492817/1‑101    ATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAC                                                 <  2:893257/101‑1    ATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAC                                                 >  1:448665/1‑101     TGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACA                                                >  1:203353/1‑101         CGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAG                                            <  2:203353/101‑1           GTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCA                                          >  1:305410/1‑101            TAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCAt                                         <  1:1099239/101‑2             AAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCAtg                                        <  1:1278693/101‑3             AAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCAtg                                        <  2:1300101/101‑3              AAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGC                                       <  2:487874/101‑1               AACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCA                                      >  1:834608/1‑101                  AGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAAT                                   <  2:903019/101‑1                  AGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAAT                                   <  1:1008613/101‑1                  AGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAAT                                   >  2:736176/1‑101                    ATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTC                                 >  1:1244004/1‑101                     TAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCA                                <  2:1392435/101‑1                     TAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCA                                <  2:156463/101‑1                        ATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATA                             >  2:488299/1‑101                           TTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATAT                          <  2:507342/101‑1                           TTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATAT                          <  2:499167/101‑1                            TTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATT                         <  2:1492626/101‑1                            TTTCCCGTGTTCTCAAATTGATGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATT                         >  2:1250463/1‑101                             tcCCCGTTTTCTCACATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTG                        <  2:1575602/99‑1                              TCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGC                       >  2:266712/1‑101                                 CGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGA                    <  1:330415/101‑1                                     TTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGttc                >  1:1620452/1‑98                                      TCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGttca               <  2:1485386/101‑5                                           AATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAG          <  2:197023/101‑1                                            ATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGG         <  1:1708527/101‑1                                             TTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCCACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGC        <  1:115378/101‑1                                                CTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTG     <  2:1256254/101‑1                                                  GACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGAT   <  1:206792/101‑1                                                   ACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATA  <  1:216856/101‑1                                                   ACAAGTGCTTGTTGTGAAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATA  >  2:1045766/1‑101                                                                                                                                                         CTTATGGGCGGTAAAACAGATAAATTTTTTCCCGTGTTCTCAAATTGCTGACAAGTGCTTGTTGTGAAATGCCGGATGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  196/83‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATA  <  91/8411‑8344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.