New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	171	= 6018	5 (0.070)	79 (0.050)	59/196	0.1	97.0%	intergenic (–/–)	–/–	–/–
	?	222	3 =	0 (0.000)					intergenic (–/–)	–/–	–/–

CGGGTGCTTGAGGCTATCTGCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  171/5917‑6018 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCAC  >  222/3‑98                                                                                                                                                                                                        CGGGTGCTTGAGGCTATCTGCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCT                                                                                                   <  2:1171325/101‑1  GGGTGCTTGAGGCTATCTGCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTG                                                                                                  >  2:776931/1‑101   GGTGCTTGAGGCTATCTGCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGT                                                                                                 <  1:403833/101‑1     TGCTTGAGGCTATCTGCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTAC                                                                                               <  2:128897/101‑1     TGCTTGAGGCTATCTGCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTAC                                                                                               <  1:1141799/101‑1       CTTGAGGCTATCTGCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTG                                                                                             >  2:22995/1‑101         TGAGGCTATCTGCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCA                                                                                           >  2:21088/1‑101         TGAGGCTATCTGCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCA                                                                                           >  1:118551/1‑101           AGGCTATCTGCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACC                                                                                         >  2:1217443/1‑101           AGGCTATCTGCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACC                                                                                         <  1:535637/101‑1               TATCTGCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATT                                                                                     >  1:439159/1‑101               TATCTGCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATT                                                                                     <  1:641301/101‑1               TATCTGCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATT                                                                                     >  2:1122369/1‑101                ATCTGCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTT                                                                                    <  2:1636215/101‑1                 TCTGCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTT                                                                                   >  1:438623/1‑101                   TGCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGT                                                                                 >  2:657494/1‑101                    GCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTT                                                                                <  2:829096/101‑1                    GCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTT                                                                                >  2:1254296/1‑101                     CCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTG                                                                               <  2:1706229/101‑1                     CCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTG                                                                               <  2:710819/101‑1                     CCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTG                                                                               <  1:772438/101‑1                     CCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTG                                                                               >  2:516210/1‑101                             ATGAACACCAACNNCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGA                                                                       >  2:614760/1‑101                             ATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGA                                                                       >  2:94219/1‑101                             ATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGA                                                                       >  1:95983/1‑101                              TGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAA                                                                      <  2:471606/101‑1                                 ACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATG                                                                   <  1:1217448/101‑1                                  CACCAACGGCAGATAGAGAAAAGCCCCAGTTAGCATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGG                                                                  <  2:1350055/101‑1                                    CCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA                                                                <  1:71689/101‑1                                    CCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA                                                                >  1:1270327/1‑101                                      AACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA                                                              <  1:973860/101‑1                                      AACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA                                                              <  2:1556352/101‑1                                       ACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG                                                             <  1:965462/101‑1                                        CGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC                                                            <  2:841221/101‑1                                        CGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC                                                            <  1:1322782/101‑1                                            AGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT                                                        <  2:1034802/101‑1                                            AGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT                                                        >  1:218496/1‑101                                             GATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA                                                       <  2:604921/101‑1                                               TAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT                                                     <  2:555052/101‑1                                                AGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA                                                    >  1:765416/1‑101                                                AGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA                                                    >  2:618746/1‑101                                                AGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA                                                    <  2:765411/101‑1                                                 GAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT                                                   <  1:776936/101‑1                                                 GAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT                                                   <  1:657499/101‑1                                                 GAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT                                                   <  1:1257263/101‑1                                                 GAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT                                                   <  1:1093303/101‑1                                                 GAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT                                                   <  1:1242026/101‑1                                                   GAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGT                                                 <  1:15752/101‑1                                                    AAAAG‑CCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCA                                               <  1:1629571/101‑1                                                      AAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAA                                              <  1:500638/101‑1                                                       AGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAA                                             <  2:1027004/101‑1                                                       AGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAA                                             <  1:778273/101‑1                                                       AGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAA                                             <  1:1007772/101‑1                                                         CCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGC                                           >  2:903767/1‑101                                                             AGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAA                                       >  2:428768/1‑101                                                             AGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAA                                       <  1:1318383/101‑1                                                              GTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAA                                      >  1:893429/1‑101                                                               TTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAAT                                     >  2:510995/1‑101                                                                 AACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAC                                   >  1:897358/1‑101                                                                 AACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAC                                   <  1:1122374/101‑1                                                                 AACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAC                                   <  1:45139/101‑1                                                                  ACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACC                                  >  1:1271337/1‑101                                                                      TACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT                              <  2:400273/101‑1                                                                       ACGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTT                             <  1:1044702/101‑1                                                                        CGCGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTG                            <  1:312266/101‑1                                                                          CGTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAA                          <  2:938294/101‑1                                                                           GTCCTGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAA                         <  1:614765/101‑1                                                                               TGCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCG                     <  1:618751/101‑1                                                                                GCAAGACGCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGC                    >  2:625699/1‑101                                                                                       GCTTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAG             >  2:1493055/1‑101                                                                                         TTAACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTC           >  1:230249/1‑101                                                                                            ACATTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTG        >  1:1554869/1‑101                                                                                               TTAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAT     <  2:550565/101‑1                                                                                                TAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATC    <  1:1699184/101‑1                                                                                                TAATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATC    <  2:893424/101‑1                                                                                                 AATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCA   <  1:21088/101‑1                                                                                                 AATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCA   >  1:337472/1‑101                                                                                                 AATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCA   <  2:423209/101‑1                                                                                                  ATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCAC  >  1:1475783/1‑101                                                                                                  ATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCAC  >  1:1656875/1‑101                                                                                                  ATCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCAC  <  1:1017337/101‑1                                                                                                                                                                                                        CGGGTGCTTGAGGCTATCTGCCTCGGGCATGAACACCAACGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  171/5917‑6018 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCAC  >  222/3‑98

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.