New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	17	= 18484	7 (0.100)	71 (0.040)	56/200	0.2	95.3%	intergenic (–/–)	–/–	–/–
	?	222	1 =	0 (0.000)					intergenic (–/–)	–/–	–/–

AAGACGCCGCTGTTAGCGGAAGACGCCGCAGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  17/18385‑18484 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCAC  >  222/1‑98                                                                                                                                                                                                        AAGACGCCGCTGTTAGCGGAAGACGCCGCAGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAAT                                                                                                   <  2:1714527/101‑1   GACGCCGCTGTTAGCGGAAGACGCCGCAGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGT                                                                                                 >  2:157648/1‑101     CGCCGCTGTTAGCGGAAGACGCCGCAGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTAC                                                                                               >  2:174784/1‑101      GCCGCTGTTAGCGGAAGACGCCGCAGAGGGCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGGTCAACAATGTAat                                                                                              >  2:37965/1‑99        CGCTGTTAGCGGAAGACGCCGCAGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGC                                                                                            >  2:720959/1‑101         GCTGTTAGCGGAAGACGCCGCAGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCA                                                                                           <  2:930285/101‑1         GCTGTTAGCGGAAGACGCCGCAGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCA                                                                                           <  2:881105/101‑1          CTGTTAGCGGAAGACGCCGCAGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCAC                                                                                          <  2:108281/101‑1           TGTTAGCGGAAGACGCCGCAGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACC                                                                                         <  2:22113/101‑1                 CGGAAGACGCCGCAGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTT                                                                                   <  1:1459738/101‑1                  GGAAGACGCCGCAGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTG                                                                                  >  1:1156263/1‑101                    AAGACGCCGCAGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTT                                                                                <  1:1286969/101‑1                    AAGACGCCGCAGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTT                                                                                <  2:524003/101‑1                          CCGCAGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGg                                                                          <  2:1156436/101‑2                           CGCAGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGAT                                                                         <  1:935807/101‑1                           CGCAGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGAT                                                                         <  1:1553712/101‑1                             CAGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGA                                                                       <  1:1243375/101‑1                              AGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAA                                                                      <  1:360110/101‑1                              AGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAA                                                                      <  2:1499788/101‑1                              AGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAA                                                                      <  1:33136/101‑1                                AGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAAT                                                                    <  1:854550/101‑1                                   TCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGA                                                                 >  2:1701266/1‑101                                       CACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG                                                             >  2:1425571/1‑101                                        ACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC                                                            <  1:1598112/101‑1                                         CCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCC                                                           <  2:520324/101‑1                                          CACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCC                                                          >  2:56758/1‑101                                           ACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCC                                                         <  1:1577888/101‑1                                            CAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT                                                        >  2:1626048/1‑101                                               AGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT                                                     <  1:343899/101‑1                                                 TTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT                                                   <  2:1712249/101‑1                                                 TTGATCACACTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCTTTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT                                                   <  1:732662/101‑1                                                  TGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG                                                  <  1:461621/101‑1                                                  TGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG                                                  <  1:900320/101‑1                                                   GATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGT                                                 <  2:417553/101‑1                                                     TCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCA                                               >  2:323362/1‑101                                                      CACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAA                                              <  1:868474/101‑1                                                        cgctccCGGCAGCAGGCAGCCCTAGCAACACGCACAGTTCAACCATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAG                                            <  2:257192/95‑1                                                         GCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGC                                           >  1:469268/1‑101                                                          CTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATATACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCC                                          >  1:532015/1‑101                                                             GCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAA                                       >  1:1185631/1‑101                                                               GGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAAT                                     >  2:554566/1‑101                                                               GGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAAT                                     >  1:1412346/1‑101                                                                 CAGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAC                                   >  2:1659608/1‑101                                                                  AGCAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACC                                  <  1:158860/101‑1                                                                    CAGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCT                                <  1:157648/101‑1                                                                     AGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTT                               >  1:1136479/1‑101                                                                     AGGCAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTT                               >  1:700315/1‑101                                                                        CAGCCCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTG                            <  1:1256895/101‑1                                                                            CCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAA                        <  2:1458065/101‑1                                                                            CCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAA                        >  1:731965/1‑101                                                                            CCTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAA                        >  2:1623616/1‑101                                                                             CTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAG                       <  2:1235924/101‑1                                                                             CTACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAG                       >  2:1522117/1‑101                                                                              TACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGC                      >  2:1591372/1‑101                                                                               ACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCG                     <  1:1670091/101‑1                                                                               ACCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCG                     >  2:874718/1‑101                                                                                CCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGC                    <  1:795892/101‑1                                                                                CCAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGC                    >  1:430812/1‑101                                                                                 CAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCC                   >  1:19280/1‑101                                                                                 CAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCC                   >  1:1363797/1‑101                                                                                 CAACACGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCC                   >  2:854922/1‑101                                                                                      CGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAA              >  1:690860/1‑101                                                                                      CGAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAA              <  1:323362/101‑1                                                                                       GAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAG             <  1:1509746/101‑1                                                                                       GAACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAG             >  2:316748/1‑101                                                                                        AACAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGT            >  1:456807/1‑101                                                                                          CAGTTCAACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCG          >  1:1356860/1‑101                                                                                                 ACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCA   >  2:1366569/1‑101                                                                                                 ACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCA   <  1:1547487/101‑1                                                                                                 ACAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCA   <  1:1434889/101‑1                                                                                                  CAATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCAC  <  2:430807/101‑1                                                                                                                                                                                                        AAGACGCCGCTGTTAGCGGAAGACGCCGCAGAGGTCAGCACCACAAAGTTGATCACGCTTGCGGCAGCAGGCAGCCCTACCAACACGAACAGTTCAACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  17/18385‑18484 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCAC  >  222/1‑98

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.