New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	160	1 =	0 (0.000)	29 (0.610)	22/168	1.5	65.2%	intergenic (–/–)	–/–	–/–
	?	87	19495 =	31 (0.640)					intergenic (–/–)	–/–	–/–

CGATGTGCGGCATGATTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  160/116‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatcagggacatcgcAAACAATATGAAGACGGGTTTCTTCTCTGC‑‑‑‑‑‑‑  >  87/19495‑19524                                                                                                                                                           CGATGTGCGGCATGATTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTT                                                      <  2:1145553/101‑1  GATGTGCGGCATGATTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTC                                                     <  1:1054827/101‑1  GATGTGCGGCATGATTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTC                                                     >  1:1461619/1‑101  GATGTGCGGCATCATTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTC                                                     <  2:521143/101‑1   ATGTGCGGCATGATTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCA                                                    <  1:1116956/101‑1     GTGCGGCATGATTGTGGTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATC                                                  <  1:527487/101‑1     GTGCGGCATGATTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATC                                                  <  2:117471/101‑1      TGCGGCATGATTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCA                                                 <  2:511166/101‑1       attcacaatgTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAG                                                >  2:483728/11‑101       GCGGCATGATTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAG                                                <  1:658340/101‑1       GCGGCATGATTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAG                                                <  1:230613/101‑1         GGCATGATTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGG                                              >  2:252911/1‑101         GGCATGATTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGG                                              <  2:1608327/101‑1           CATGATTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGAC                                            <  2:1650828/101‑1           CATGATTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGAC                                            <  2:698099/101‑1            cTGATTGGGCTCCTTTTGAAAGATGTCAGTAAAATTAACACCCATTGTGAATTTTCAGTCCTTTCCATTCCAACGGGAAATCAAAAAGTTCATCAGGGACA                                           <  2:837168/100‑1            ATGATTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACA                                           >  2:174114/1‑101            ATGATTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACA                                           >  2:289473/1‑101            ATGATTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACA                                           >  2:1592575/1‑101                 TGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCA                                      >  2:436023/1‑101                 TGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCA                                      >  1:1350009/1‑101                  GTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAA                                     >  2:1520938/1‑101                    GCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAAC                                   >  1:647078/1‑101                    GCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAAC                                   <  1:390370/101‑1                       CCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAAT                                <  1:1026292/101‑1                         TTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATAT                              <  1:174114/101‑1                         TTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATAT                              >  2:1544220/1‑101                          TTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATG                             <  1:444300/101‑1                           TTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGA                            <  2:647073/101‑1                           TTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGA                            <  2:128858/101‑1                            TGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGAA                           >  2:1587116/1‑101                             GAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGAAt                          <  2:761559/101‑2                               AAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGAATAC                        >  2:1103332/1‑101                               AAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGAATAC                        >  1:643961/1‑101                                   TGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGAATACGGat                    >  2:348950/1‑99                                      CAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGAATACGGATTTC                 <  2:660616/101‑1                                      CAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGAATACGGATTTC                 <  1:1481573/101‑1                                       AGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGAATACGGATTTCT                >  2:1442157/1‑101                                        GTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGAATACGGATTTCTT               <  1:267975/101‑1                                          AAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGAATACGGATTTCTTCT             >  2:1349707/1‑101                                          AAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGAATACGGATTTCTTCT             <  1:47529/101‑1                                            AATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGAATACGGATTTCTTCTCT           >  1:183308/1‑101                                             ATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGAATACGGATTTCTTCTCTG          >  2:252154/1‑101                                              TTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTTAAATCAATAAGTTCATCAGGTACATCGCAAACAATATGAATACGGATTTCTTCTCTGC         <  1:985547/101‑1                                               TAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGAATACGGATTTCTTCTCTGCc        >  1:1233426/1‑100                                                   ACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGAATACGGATTTCTTCTCTGCcgtga    >  1:1402575/1‑96                                                     ACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGAATACGGATTTCTTCTCTGCcgtgact  >  2:25257/1‑94                                                     ACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGCAAACAATATGAATACGGATTTCTTCTCGGCcgtgact  >  2:954269/1‑94                                                                                                                                                           CGATGTGCGGCATGATTGTGCTCCTTTTGAAAGATGTCAGTAAAATTAACACACATTGTGAATTTTCAGTCCTTTCCATTCAAACGTGAAATCAATAAGTTCATCAGGGACATCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  160/116‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatcagggacatcgcAAACAATATGAAGACGGGTTTCTTCTCTGC‑‑‑‑‑‑‑  >  87/19495‑19524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.