New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	152	6 =	4 (0.060)	34 (0.490)	18/166	2.2	95.3%	intergenic (–/–)	–/–	–/–
	?	65	18 =	0 (0.000)					intergenic (–/–)	–/–	–/–

ATTGCGAGTGCAGGTGAATCGCGACTGATACATTGCCAGCCGCGTAATCAGAACTATTGAATGACTGCCTACGGGCGAAATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  152/121‑6 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcacgccgcatccggcaCTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAGCGTGCCGTTGCCTGCGTC  >  65/18‑117                                                                                                                                                                                                                          ATTGCGAGTGCAGGTTAATCGCGACTGATACATTGCCAGCCGCGTAATCAGAACTATTGAATGACTGCCTACGGGCGAAATGTAGGCCGGATAAGGCGTTC                                                                                                                     <  2:85143/101‑1  TTGCGAGTGCAGGTGAATCGCGACTGATACATTGCCAGCCGCGTAATCAGAACTATTGAATGACTGCCTACGGGCGAAATGTAGGCCGGATAAGGCGTTCA                                                                                                                    <  1:775917/101‑1  TTGCGAGTGCAGGTGAATCGCGACTGATACATTGCCAGCCGCGTAATCAGAACTATTGAATGACTGCCTACGGGCGAAATGTAGGCCGGATAAGGCGTTCA                                                                                                                    <  2:319826/101‑1   TGCGAGTGCAGGTGAATCGCGACTGATACATTGCCAGCCGCGTAATCAGAACTATTGAATGACTGCCTACGGGCGAAATGTAGGCCGGATAAGGCGTTCAC                                                                                                                   <  1:1524938/101‑1           CAGGTGAATCGCGACTGATACATTGCCAGCCGCGTAATCAGAACTATTGAATGACTGCCTACGGGCGAAATGTAGGCCGGATAAGGCGTTCACGCCGCATC                                                                                                           <  1:1640502/101‑1            AGGTGAATCGCGACTGATACATTGCCAGCCGCGTAATCAGAACTATTGAATGACTGCCTACGGGCGAAATGTAGGCCGGATAAGGCGTTCACGCCGCATCC                                                                                                          >  2:435624/1‑101             GGTGAATCGCGACTGATACATTGCCAGCCGCGTAATCAGAACTATTGAATGACTGCCTACGGGCGAAATGTAGGCCGGATAAGGCGTTCACGCCGCATCCG                                                                                                         <  1:1107333/101‑1              GTGAATCGCGACTGATACATTGCCAGCCGCGTAATCAGAACTATTGAATGACTGCCTACGGGCGAAATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGG                                                                                                        <  1:353454/101‑1                                                                 cctggttcgtGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATA                                                     >  1:1601525/11‑101                                                                   tggttcgtGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACC                                                   <  2:684747/93‑1                                                                   tggttcgtGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACC                                                   <  1:42455/93‑1                                                                    ggttcgtGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCA                                                  >  2:60954/8‑101                                                                     gttcgtGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCAC                                                 <  1:434039/95‑1                                                                      ttcgtGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACC                                                >  2:996484/6‑101                                                                      ttcgtGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACC                                                <  1:1716807/96‑1                                                                         gtGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGA                                             >  1:1452906/3‑101                                                                           GCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAAC                                           >  1:117711/1‑101                                                                            CGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACG                                          <  2:599171/101‑1                                                                            CGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACG                                          >  2:1062777/1‑101                                                                            CGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACG                                          >  1:145479/1‑101                                                                              acATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGAT                                        <  1:183432/99‑1                                                                              acATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGAT                                        <  2:452384/99‑1                                                                               catcTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATT                                       <  2:761732/97‑1                                                                                   TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTT                                   <  2:441529/101‑1                                                                                    AGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTA                                  <  1:948765/101‑1                                                                                    AGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTA                                  <  2:1395695/101‑1                                                                                       CCGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGT                               >  2:1233898/1‑101                                                                                        CGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTG                              >  1:1666027/1‑101                                                                                        CGGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTG                              >  2:1015449/1‑101                                                                                         GGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGT                             >  1:602462/1‑101                                                                                         GGATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGT                             <  2:1176513/101‑1                                                                                         GGATAAGGCGCTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCCCTTTTTTATACCACCAGAACGATTTCTTACGTGT                             <  2:493109/101‑1                                                                                          GATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTG                            <  1:555290/101‑1                                                                                           ATAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGC                           <  2:1659742/101‑1                                                                                            TAAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCG                          >  1:421713/1‑101                                                                                             AAGGCGTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGC                         >  1:1431297/1‑101                                                                                                  GTTCACGCCGCATCCGGCACTGTTACTTAGTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAG                    >  1:1631814/1‑101                                                                                                  GTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAG                    >  2:1381411/1‑101                                                                                                  GTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAG                    <  1:967863/101‑1                                                                                                  GTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAG                    >  1:690644/1‑101                                                                                                  GTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAG                    >  2:1194049/1‑101                                                                                                  GTTCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAG                    >  2:1229746/1‑101                                                                                                    TCACGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAGCG                  <  2:692233/101‑1                                                                                                       CGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAGCGTGC               >  1:1697500/1‑101                                                                                                       CGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAGCGTGC               >  1:91997/1‑101                                                                                                       CGCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAGCGTGC               >  2:1464563/1‑101                                                                                                        GCCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAGCGTGCC              <  1:1062782/101‑1                                                                                                         CCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAGCGTGCCG             >  1:1636649/1‑101                                                                                                         CCGCATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAGCGTGCCG             >  2:992813/1‑101                                                                                                            CATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGCCAGCGTGCCGTTc          >  2:1620201/1‑100                                                                                                             ATCCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAGCGTGCCGTTGC         >  2:567353/1‑101                                                                                                               CCGGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAGCGTGCCGTTGCCT       <  1:1492562/101‑1                                                                                                                 GGCACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAGCGTGCCGTTGCCTGC     >  2:957342/1‑101                                                                                                                   CACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAGCGTGCCGTTGCCTGCGT   >  2:1266100/1‑101                                                                                                                   CACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAGCGTGCCGTTGCCTGCGT   >  1:378294/1‑101                                                                                                                    ACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAGCGTGCCGTTGCCTGCGTC  >  1:950991/1‑101                                                                                                                    ACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAGCGTGCCGTTGCCTGCGTC  <  2:1490333/101‑1                                                                                                                    ACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAGCGTGCCGTTGCCTGCGTC  >  1:40621/1‑101                                                                                                                    ACTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTCTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAGCGTGCCGTTGCCTGCGTC  <  2:740049/101‑1                                                                                                                                                                                                                          ATTGCGAGTGCAGGTGAATCGCGACTGATACATTGCCAGCCGCGTAATCAGAACTATTGAATGACTGCCTACGGGCGAAATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  152/121‑6 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcacgccgcatccggcaCTGTTACTTACTCTAAATCTTCACCATTACTGGCAATCACTTTTTTATACCACCAGAACGATTTCTTACGTGTGCGCGTCAGCGTGCCGTTGCCTGCGTC  >  65/18‑117

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.