New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 149 1 =0 (0.000)65 (0.070)
+T
49/198 0.2 100% intergenic (–/–) –/– –/–
?223 = 698 0 (0.000)intergenic (–/–) –/– –/–

AAGTTAACGGCGTGAGTGAAATGTGCCGGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  149/100‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC  <  223/698‑615
                                                                                                    |                                                                                    
AAGTTAACGGCGTGAGTGAAATGTGCCGGATGTATCACATCCGGAAATATCCATTAAAACTGATAGGTCACGCCAACCGCGACAAGGTGATGCTGCCAACT                                                                                      <  2:786141/101‑1
 AGTTAACGGCGTGAGTGAAATGTGCCGGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTT                                                                                     >  2:29021/1‑101
  GTTAACGGCGTGAGTGAAATGTGCCGGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTA                                                                                    >  2:844648/1‑101
   TTAACGGCGTGAGTGAAATGTGCCGGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTAC                                                                                   <  2:560925/101‑1
   TTAACGGCGTGAGTGAAATGTGCCGGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTAC                                                                                   <  1:620923/101‑1
    TAACGGCGTGAGTGAAATGTGCCGGATGTATCACCTCCGGCAATATCCATTAAAAATGATAGGGCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACT                                                                                  >  2:888515/1‑101
    TAACGGCGTGAGTGAAATGTGCCGGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACT                                                                                  <  2:535776/101‑1
     AACGGCGTGAGTGAAATGTGCCGGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTG                                                                                 >  2:1644247/1‑101
        GGCGTGAGTGAAATGTGCCGGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATT                                                                              <  2:1084893/101‑1
           GTGAGTGAAATGTGCCGGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAG                                                                           <  1:482830/101‑1
           GTGAGTGAAATGTGCCGGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAG                                                                           <  2:371290/101‑1
             GAGTGAAATGTGCCGGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTG                                                                         <  2:42908/101‑1
             GAGTGAAATGTGCCGGATGTAACACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTG                                                                         >  1:339053/1‑101
              AGTGAAATGTGCCGGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGT                                                                        <  1:1478263/101‑1
               GTGAAATGTGCCGGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTA                                                                       >  2:789877/1‑101
                 GAAATGTGCCGGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATG                                                                     >  1:419174/1‑101
                  AAATGTGCCGGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGA                                                                    >  1:153325/1‑101
                          CGGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTT                                                            <  1:179546/101‑1
                           GGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTT                                                           >  1:13452/1‑101
                           GGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTT                                                           <  1:362496/101‑1
                              TGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGA                                                        <  1:1489505/101‑1
                                TATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGG                                                      <  1:539683/101‑1
                                TATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGG                                                      <  1:100220/101‑1
                                 ATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT                                                     >  1:1000950/1‑101
                                 ATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT                                                     >  1:266487/1‑101
                                    ACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCT                                                  <  1:408933/101‑1
                                      ATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCC                                                >  1:312130/1‑101
                                      ATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCC                                                >  1:1324415/1‑101
                                         CGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGT                                             >  2:513166/1‑101
                                         CGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGT                                             >  2:876598/1‑101
                                            CAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGC                                          <  1:444629/101‑1
                                            CAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGC                                          >  2:1387820/1‑101
                                             AATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCT                                         >  1:1585060/1‑101
                                             AATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCT                                         >  1:291008/1‑101
                                             AATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACAGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGAGGat                                         >  1:806604/1‑99
                                              ATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTT                                        >  1:220561/1‑101
                                                 TCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTG                                     <  1:225912/101‑1
                                                   CATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTT                                   >  2:61810/1‑101
                                                    ATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTT                                  >  1:1381813/1‑101
                                                    ATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTT                                  >  2:1060536/1‑101
                                                      TAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCT                                <  1:846694/101‑1
                                                         AACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATC                             <  1:816355/101‑1
                                                           CTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAG                           <  2:31161/101‑1
                                                             GATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCT                         >  1:413056/1‑101
                                                               TAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGT                       >  1:314154/1‑101
                                                               TAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGT                       >  2:1029929/1‑101
                                                                 GGTCATGCCATCCGCGACAAGGTTATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCC                     <  2:645727/101‑1
                                                                    CATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTC                  <  1:642354/101‑1
                                                                     ATGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCC                 >  2:713048/1‑101
                                                                      TGCCAACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCT                <  2:338877/101‑1
                                                                          AACCGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTC            >  2:1677026/1‑101
                                                                             CGCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGC         >  2:1054447/1‑101
                                                                              GCGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGAGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCT        >  2:25128/1‑101
                                                                               CGACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTA       <  1:460534/101‑1
                                                                                GACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTAC      <  1:844653/101‑1
                                                                                 ACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACT     <  2:1000945/101‑1
                                                                                  CAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTG    <  1:1060541/101‑1
                                                                                   AAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGA   <  1:1085243/101‑1
                                                                                    AGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTCCTGcg  >  1:1553192/1‑99
                                                                                    AGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC  <  1:653469/101‑1
                                                                                    AGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC  >  2:1206208/1‑101
                                                                                    AGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC  >  2:633804/1‑101
                                                                                    AGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC  >  2:1533394/1‑101
                                                                                    AGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC  >  1:1514989/1‑101
                                                                                    AGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC  >  1:455658/1‑101
                                                                                    AGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC  <  2:1585054/101‑1
                                                                                                    |                                                                                    
AAGTTAACGGCGTGAGTGAAATGTGCCGGATGTATCACATCCGGCAATATCCATTAAAACTGATAGGTCATGCCAACCGCGACAAGGTGATGCTGCCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  149/100‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC  <  223/698‑615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.