New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	142	= 5578	2 (0.030)	66 (0.040)	52/200	0.1	98.5%	intergenic (–/–)	–/–	–/–
	?	222	1 =	0 (0.000)					intergenic (–/–)	–/–	–/–

GCTACAGCAGGTGGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  142/5481‑5578 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCA  >  222/1‑97                                                                                                                                                                                                     GCTACAGCAGGTGGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGT                                                                                                >  2:1035450/1‑101   TACAGCAGGTGGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTAC                                                                                              >  1:369181/1‑101        CAGGTGGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCAC                                                                                         >  2:1535031/1‑101          GGTGGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCTGTTTCTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCC                                                                                       >  2:387465/1‑101          GGTGGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCC                                                                                       <  2:1014081/101‑1               CTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTT                                                                                  <  1:1081845/101‑1               CTGATGCCAGAAGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGAAAAAGCTGGAGGTGTACTGCGCCCATTTT                                                                                  <  2:292849/101‑1                TGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTG                                                                                 >  1:396954/1‑101                TGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTG                                                                                 >  2:1176277/1‑101                   TGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTG                                                                              <  1:1378309/101‑1                    GCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGG                                                                             <  1:968444/101‑1                    GCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGGGTACTGCACCCATTTTGTTGG                                                                             >  2:596272/1‑101                      CAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGAC                                                                           >  2:1020980/1‑101                         CGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGAT                                                                        <  1:919901/101‑1                          GGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATG                                                                       >  2:904348/1‑101                             ATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAA                                                                    <  1:674030/101‑1                              TGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAAT                                                                   >  1:1558022/1‑101                                 CCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGA                                                                >  1:1601456/1‑101                                  CAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA                                                               <  1:492444/101‑1                                  CAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA                                                               <  1:755444/101‑1                                  CAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA                                                               <  1:1210893/101‑1                                    AAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA                                                             >  2:602165/1‑101                                          ATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT                                                       >  1:1472318/1‑101                                          ATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT                                                       >  2:1301622/1‑101                                             TAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT                                                    <  1:551625/101‑1                                             TAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT                                                    >  1:1681411/1‑101                                               AGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT                                                  <  2:1541785/101‑1                                                  CAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTC                                               >  2:652311/1‑101                                                   AGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCA                                              <  1:274945/101‑1                                                    GTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTTAA                                             >  1:1387887/1‑101                                                     TTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAA                                            <  2:1255685/101‑1                                                     TTACTGAATGCCAAAATCAAAAACCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAA                                            <  2:234741/101‑1                                                      TACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAG                                           >  1:734978/1‑101                                                        CTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCC                                         >  1:1413300/1‑101                                                        CTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCC                                         >  2:357899/1‑101                                                         TGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCA                                        >  2:1314840/1‑101                                                         TGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCA                                        >  2:341151/1‑101                                                          GAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAA                                       >  2:600411/1‑101                                                          GAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCAACCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAA                                       <  1:823442/101‑1                                                           AATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAA                                      >  2:939605/1‑101                                                               CCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAC                                  <  2:1466211/101‑1                                                                 AAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCC                                >  2:1364975/1‑101                                                                 AAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCC                                >  1:1026665/1‑101                                                                   AATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTT                              >  1:1097537/1‑101                                                                     TCAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTT                            <  1:1138549/101‑1                                                                      CAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTG                           >  1:1056402/1‑101                                                                      CAAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTG                           >  2:539319/1‑101                                                                       AAAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGA                          >  1:1269869/1‑101                                                                        AAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAA                         >  1:1315158/1‑101                                                                        AAAGCCCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAA                         >  1:789951/1‑101                                                                             CCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCG                    >  1:100166/1‑101                                                                             CCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCG                    >  2:1670953/1‑101                                                                             CCCAGCGCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCG                    <  2:1170054/101‑1                                                                                   GCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGA              <  2:1558016/101‑1                                                                                   GCGCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGA              >  2:21928/1‑101                                                                                     GCAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAG            <  1:602170/101‑1                                                                                      CAAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGT           >  1:545252/1‑101                                                                                       AAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTC          >  2:1336340/1‑101                                                                                       AAAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTC          <  2:1315152/101‑1                                                                                        AAAGCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCG         <  1:1206043/101‑1                                                                                           GCTGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGA      <  2:1405098/101‑1                                                                                             TGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAT    <  1:1501193/101‑1                                                                                             TGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAT    <  1:1314846/101‑1                                                                                             TGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAT    >  1:939391/1‑101                                                                                             TGGAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCACCTTGAAGTCGTGAAT    <  1:1157004/101‑1                                                                                               GAGGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCA  <  2:105187/101‑1                                                                                                                                                                                                     GCTACAGCAGGTGGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  142/5481‑5578 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCA  >  222/1‑97

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.