New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	140	1 =	0 (0.000)	38 (0.630)	31/198	1.4	100%	intergenic (–/–)	–/–	–/–
	?	72	= 22436	0 (0.000)					intergenic (–/–)	–/–	–/–

CTTTAAAAAAGGCGATGCGCTGATGGGTTAATTCGAGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  140/100‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAATCGGGCAGCGTCGTGCTGCCCGTGTGCATACTTTTAGTCGATGGTACGCA  <  72/22436‑22337                                                                                                                                                                                                          CTTTAAAAAAGGCGATGCGCTGATGGGTTAATTCGAGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCA                                                                                                     <  2:1058490/101‑1          AGGCGATGCGCTGATGGGTTAATTCGAGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAAC                                                                                            <  2:692226/101‑1          AGGCGATGCGCTGATGGGTTAATTCGAGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAAC                                                                                            <  1:347111/101‑1          AGGCGATGCGCTGATGGGTTAATTCGAGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAAC                                                                                            >  2:1531946/1‑101               ATGCGCTGATGGGTTAATTCGAGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAAaa                                                                                       >  2:1273569/1‑99               ATGCGCTGATGGGTTAATTCGAGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACA                                                                                       >  2:1292334/1‑101               ATGCGCTGATGGGTTAATTCGAGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACA                                                                                       >  2:1057600/1‑101                   GCTGATGGGTTAATTCGAGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTG                                                                                   >  2:689444/1‑101                    CTGATGGGTTAATTCGAGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGC                                                                                  <  2:1264986/101‑1                      GATGGGTTAATTCGAGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGT                                                                                >  1:326943/1‑101                       ATGGGTTAATTCGAGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTG                                                                               >  2:1415403/1‑101                         GGGTTAATTCGAGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAA                                                                             >  1:1041907/1‑101                         GGGTTAATTCGAGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAA                                                                             <  1:667520/101‑1                          GGTTAATTCGAGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAA                                                                            >  1:1394713/1‑101                          GGTTAATTCGAGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAA                                                                            >  2:874816/1‑101                                  CGAGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCT                                                                    <  1:441746/101‑1                                    AGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCA                                                                  >  2:1433914/1‑101                                    AGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAAAATCTGCGTGAAATCATCGCTCA                                                                  >  2:1600312/1‑101                                     GCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCAT                                                                 <  2:921472/101‑1                                      CCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATC                                                                >  1:437093/1‑101                                            TGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCA                                                          >  2:286921/1‑101                                                   CAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAAT                                                   <  1:868028/101‑1                                                   CAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAAT                                                   <  2:614706/101‑1                                                   CAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAAT                                                   <  2:127938/101‑1                                                      TAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAATCGG                                                >  1:1420713/1‑101                                                          GCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAATCGGGCAG                                            <  1:11742/101‑1                                                            ATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAATCGGGCAGCG                                          >  2:1092216/1‑101                                                             TATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAATCGGGCAGCGT                                         >  1:1330504/1‑101                                                                    GAAGCCTGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAATCGGGCAGCGTCGTGCTG                                  >  2:779177/1‑101                                                                          TGATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAATCGGGCAGCGTCGTGCTGCCCGTG                            <  2:962089/101‑1                                                                           GATCCGGCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAATCGGGCAGCGTCGTGCTGCCCGTGT                           <  2:714216/101‑1                                                                                 GCAGTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAATCGGGCAGCGTCGTGCTGCCCGTGTGCATAC                     <  1:148816/101‑1                                                                                    GTTAACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAATCGGGCAGCGTCGTGCTGCCCGTGTGCATACTTT                  >  2:1698175/1‑101                                                                                       AACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAATCGGGCAGCGTCGTGCTGCCCGTGTGCATACTTTTAG               >  2:668477/1‑101                                                                                        ACGTTGCGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAATCGGGCAGCGTCGTGCTGCCCGTGTGCATACTTTTAGT              <  1:1531952/101‑1                                                                                          GTTGGGGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAATCGGGCAGCGTCGTGCTGCCCGTGTGCATACTTTTAGTCG            <  2:1453407/101‑1                                                                                               GGCGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAATCGGGCAGCGTCGTGCTGCCCGTGTGCATACTTTTAGTCGATGGT       <  1:1600318/101‑1                                                                                                 CGGCAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAATCGGGCAGCGTCGTGCTGCCCGTGTGCATACTTTTAGTCGATGGTAC     <  2:437088/101‑1                                                                                                    CAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAATCGGGCAGCGTCGTGCTGCCCGTGTGCATACTTTTAGTCGATGGTACGCA  <  1:779182/101‑1                                                                                                                                                                                                          CTTTAAAAAAGGCGATGCGCTGATGGGTTAATTCGAGCCAACCTGGTTCCCAATAACGCATATAGCCGAAGCCTGATCCGGCAGTTAACGTTGCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  140/100‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cAGCCAGTAACAAACATCTGCGTGAAATCATCGCTCATCCCTGCAAAAAAATCGGGCAGCGTCGTGCTGCCCGTGTGCATACTTTTAGTCGATGGTACGCA  <  72/22436‑22337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.