New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	14	= 27531	3 (0.040)	57 (0.040)	47/198	0.8	97.5%	intergenic (–/–)	–/–	–/–
	?	222	= 1442	0 (0.000)					intergenic (–/–)	–/–	–/–

GCTGCGGGTCACTGTGGTTTTGGCCTCGGTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  14/27432‑27531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCT  <  222/1442‑1352                                                                                                                                                                                                 GCTGCGGGTCACTGTGGTTTTGGCCTCGGTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTG                                                                                            <  1:1167664/101‑1  CTGCGGGTCACTGTGGTTTTGGCCTCGGTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGT                                                                                           >  2:275990/1‑101           ACTGTGGTTTTGGCCTCGGTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCC                                                                                  >  1:1107553/1‑101                GGTATTGGCCTCGGTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAA                                                                             >  2:1212252/1‑101                 GTTTTGGCCTCGGTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCgttgctca                                                                            <  2:816740/101‑9                  TTTTGGCCTCGGTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGT                                                                           <  1:1431709/101‑1                   TTTGGCCTCGGTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTT                                                                          <  1:928131/101‑1                    TTGGCCTCGGTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTG                                                                         <  1:210899/101‑1                      GGCCTCGGTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGA                                                                       <  2:1568354/101‑1                       GCCTCGGTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGAC                                                                      <  1:1202882/101‑1                        CCTCGGTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACA                                                                     <  2:1516083/101‑1                        CCTCGGTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACA                                                                     <  2:446384/101‑1                         CTCGGTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAG                                                                    >  1:611080/1‑101                         CTCGGTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAG                                                                    <  2:611075/101‑1                         CTCGGTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGA‑ACCAAAAAGTTGGACAGT                                                                   >  1:1606422/1‑101                           CGGTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTT                                                                  <  2:697752/101‑1                             GTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAA                                                                >  2:1691672/1‑101                             GTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAA                                                                >  2:1096965/1‑101                             GTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAA                                                                >  1:368187/1‑101                              TGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAA                                                               >  2:532691/1‑101                                  ACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACG                                                           >  2:660611/1‑101                                    GCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG                                                         <  1:103637/101‑1                                       AACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA                                                      <  1:1018927/101‑1                                            CAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG                                                 <  1:1222033/101‑1                                            CAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG                                                 >  1:844336/1‑101                                            CAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG                                                 >  1:388992/1‑101                                             AATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG                                                >  2:1566022/1‑101                                              ATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT                                               <  1:368810/101‑1                                                CGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT                                             >  2:1270086/1‑101                                                  CCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGA                                           >  1:683380/1‑101                                                    AACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATT                                         <  2:310111/101‑1                                                       ATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCG                                      >  1:694845/1‑101                                                           AGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATAT                                  >  1:1322843/1‑101                                                             GCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTC                                <  2:368187/101‑1                                                               GATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAA                              >  1:229438/1‑101                                                               GATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAA                              >  2:1039056/1‑101                                                                ATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAAT                             <  2:869769/101‑1                                                                ATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAAT                             <  1:1039717/101‑1                                                                ATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACACCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAAT                             >  2:1243925/1‑101                                                                   ACTGAACGCTTTGTCGCGTCGCACATGGCGTTTTGTACTGAACCCAAAAAGTTGGAAAGTTAAACCCGAGGCATATAGGTCTGATTCCGATATTCAATTGG                          <  2:761073/101‑1                                                                    CTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGA                         >  1:709166/1‑101                                                                    CTGAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGA                         >  1:1480719/1‑101                                                                      GAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGT                       <  2:183498/101‑1                                                                      GAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGT                       >  1:135971/1‑101                                                                      GAACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGT                       >  1:1191759/1‑101                                                                        ACGCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCA                     <  1:1167533/101‑1                                                                          GCTTTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGA                   <  1:1128408/101‑1                                                                             TTGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCT                <  1:532696/101‑1                                                                              TGGCCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTT               >  2:147459/1‑101                                                                                 CCCGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTA            >  2:280789/1‑101                                                                                   CGTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAAT          >  1:504962/1‑101                                                                                    GTCGCACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATT         >  2:1670810/1‑101                                                                                        ccCATGGCGTTTTGTACTGCACCAAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAG     <  2:706837/99‑1                                                                                         ACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGG    >  2:309562/1‑101                                                                                         ACATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGG    <  2:1311449/101‑1                                                                                          CATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGC   >  2:1669528/1‑101                                                                                           ATGGCGTTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCT  >  1:881924/1‑101                                                                                                                                                                                                 GCTGCGGGTCACTGTGGTTTTGGCCTCGGTGCAACGCCAACGGCAATCGCCAACATGCAGGCGATCACTGAACGCTTTGGCCCGTCGCACATGGCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  14/27432‑27531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCT  <  222/1442‑1352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.