| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 134 | 12607 = | 76 (1.060) | 55 (0.960) | 37/168 | 0.5 | 63.3% | intergenic (–/–) | –/– | –/– |
| ? | 152 | = 9664 | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
GTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < 134/12699‑12607‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attttctgaccgcgcaTTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGCTCCCAATCGGTATAGACAACTT < 152/9664‑9565 cTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTAT < 2:1427755/100‑1cTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTAT < 1:899373/100‑1cTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTAT > 1:1638837/2‑101 GTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTC < 2:994878/101‑1 GTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTC < 2:1206037/101‑1 CCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTAT > 1:365144/1‑101 CCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTAT < 2:708301/101‑1 CCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTAT < 2:1652902/101‑1 CGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATG > 2:541541/1‑101 CGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATG > 2:742106/1‑101 CGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATG > 2:1373178/1‑101 CGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATG > 1:222848/1‑101 TGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTT < 1:397651/101‑1 TTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTAT < 1:1384635/101‑1 CCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTT < 2:202232/101‑1 CCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTT < 2:789503/101‑1 GTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCG > 1:892135/1‑101 TGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGG > 1:1098289/1‑101 GCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCG < 2:1656085/101‑1 ATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGT < 2:1346790/101‑1 TTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTT > 2:1102127/1‑101 TTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTT < 2:1292843/101‑1 ATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAA > 2:409824/1‑101 AGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAAT < 1:1379743/101‑1 AGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAAT < 2:1396458/101‑1 GGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATG > 2:1361134/1‑101 GGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGG < 1:993762/101‑1 GGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGG < 1:571416/101‑1 AGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGC > 2:1252858/1‑101 AGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGC > 2:1547728/1‑101 TATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGAT < 1:165457/101‑1 TATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGAT > 1:1460180/1‑101 TATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGAT < 2:1094553/101‑1 ATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATT > 1:1398751/1‑101 TCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTC < 1:409829/101‑1 TCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTC < 2:673651/101‑1 CGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTC > 1:228976/1‑101 CGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTC > 1:837570/1‑101 GCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGG < 1:541546/101‑1 TGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCG > 1:58803/1‑101 ACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAA > 1:495258/1‑101 ACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAA > 1:1501651/1‑101 GAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTC < 2:1638831/101‑1 GAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGATTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTAGGGCGAAATTC > 1:1312270/1‑101 AGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCG < 2:900992/101‑1 ATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACC > 1:490916/1‑101 ATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACC > 2:352787/1‑101 ATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACC > 1:954572/1‑101 ATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACC < 2:190428/101‑1 TTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCT > 2:621020/1‑101 TTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTG > 1:49535/1‑101 TAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGC > 2:848019/1‑101 AAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGCT > 2:1423331/1‑101 AAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGCT > 1:589793/1‑101 AATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGCGAAAATCCACCACCTGTTCC > 1:615006/1‑101 TTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGCTCCCAATC < 2:1442035/101‑1 TTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGCTCCCAATCG < 1:119377/101‑1 CTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGCTCCCAATCGGTA < 1:136871/101‑1 TGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGCTCCCAATCGGTAT < 1:352787/101‑1 TGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGCTCCCAATCGGTAT < 1:353887/101‑1 GACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGCTCCCAATCGGTATA < 2:58803/101‑1 CGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGCTCCCAATCGGTATAGAC < 2:1098284/101‑1 tATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGCTCCCAATCGGTATAGACAACT < 2:1334353/100‑1 CATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGCTCCCAATCGGTATAGACAACT < 2:726182/101‑1 CATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGCTCCCAATCGGTATAGACAACT > 1:995118/1‑101 CATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGCTCCCAATCGGTATAGACAACT > 2:1001061/1‑101 ATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGCTCCCAATCGGTATAGACAACTT > 2:1560288/1‑101 ATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGCTCCCAATCGGTATAGACAACTT > 1:588230/1‑101 ATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGCTCCCAATCGGTATAGACAACTT > 1:302250/1‑101 GTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < 134/12699‑12607‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attttctgaccgcgcaTTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGATTTCTCGGGCGAAATTCGCCACCTGCTCCCAATCGGTATAGACAACTT < 152/9664‑9565 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |