New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	12	44517 =	9 (0.130)	67 (0.040)	60/198	0.1	93.8%	intergenic (–/–)	–/–	–/–
	?	222	= 1442	0 (0.000)					intergenic (–/–)	–/–	–/–

TTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  12/44617‑44517 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATT  <  222/1442‑1348                                                                                                                                                                                                       TTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTT                                                                                                 >  2:1305703/1‑101  TTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTG                                                                                                >  2:282254/1‑101    CACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTA                                                                                              >  1:1179833/1‑101     ACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTAC                                                                                             <  2:422841/101‑1       ATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTG                                                                                           >  2:267298/1‑101           TTACGGAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCC                                                                                       >  2:1239610/1‑101            TACGGAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCC                                                                                      <  2:1072152/101‑1              CGGAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAA                                                                                    >  1:519143/1‑101                GAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAA                                                                                  >  1:1293503/1‑101                      GGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGG                                                                            <  1:1194570/101‑1                      GGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGG                                                                            >  2:282400/1‑101                       GTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGA                                                                           >  2:179156/1‑101                          ACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACCCATGTAGAAAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACA                                                                         >  1:158379/1‑101                          ACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAG                                                                        <  2:1179828/101‑1                             CTGGATTCCACCCCTTCCAGCCAGCCTTCTTCCCCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTA                                                                     <  1:482983/101‑1                             CTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTA                                                                     >  1:12411/1‑101                                GATTCAACCCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC                                                                  <  2:971622/101‑1                                     AACCCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG                                                             <  2:1145304/101‑1                                        CCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA                                                          <  1:1124391/101‑1                                         CCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCAT                                                         >  1:963893/1‑101                                          CTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA                                                        >  2:178359/1‑101                                            TCCAGACAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA                                                      >  1:1014048/1‑101                                             CCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG                                                     >  2:704855/1‑101                                             CCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG                                                     >  1:1078488/1‑101                                              CAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG                                                    >  1:351030/1‑101                                                GCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC                                                  >  1:432468/1‑101                                                 CCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT                                                 <  1:1158704/101‑1                                                 CCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT                                                 >  2:175522/1‑101                                                  CAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTG                                                <  2:224882/101‑1                                                   AGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGA                                               >  2:1328075/1‑101                                                    GCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGAT                                              <  1:755953/101‑1                                                       TTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCC                                           >  2:1660230/1‑101                                                          TTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGAT                                        >  2:1447525/1‑101                                                             ACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATT                                     >  1:1093278/1‑101                                                             ACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATT                                     >  1:114827/1‑101                                                              CCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTC                                    <  2:604565/101‑1                                                                 ATGTAG‑TAAAGCCCCATCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAAT                                 >  2:1155986/1‑101                                                                 ATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAAT                                 <  2:508263/101‑1                                                                 ATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAAT                                 >  2:1422354/1‑101                                                                  TGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATT                                <  1:1521276/101‑1                                                                   GTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTG                               >  1:1225512/1‑101                                                                    TAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGG                              <  2:1303329/101‑1                                                                      G‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAG                            <  1:593687/101‑1                                                                      G‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAG                            >  2:1321948/1‑101                                                                        TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGT                           >  1:411442/1‑101                                                                        TAAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGT                           >  1:950626/1‑101                                                                         AAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTC                          >  1:1601268/1‑101                                                                         AAAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTC                          <  1:414747/101‑1                                                                          AAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCA                         <  1:1656405/101‑1                                                                          AAGCCCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCA                         >  2:1206667/1‑101                                                                              CCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACC                     >  1:341820/1‑101                                                                              CCCAGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACC                     >  2:1463459/1‑101                                                                                 AGCTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTT                  >  1:1072958/1‑101                                                                                   CTCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTA                <  1:1411387/101‑1                                                                                    TCCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAA               >  2:789908/1‑101                                                                                     CCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAAT              >  2:1693101/1‑101                                                                                     CCCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAAT              >  2:531347/1‑101                                                                                      CCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATT             <  2:1308914/101‑1                                                                                      CCAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATT             >  1:1192542/1‑101                                                                                       CAACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTT            >  1:276880/1‑101                                                                                         ACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCA          <  1:282400/101‑1                                                                                         ACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCA          >  1:840787/1‑101                                                                                         ACTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCA          <  1:256238/101‑1                                                                                          CTTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAG         <  1:1321954/101‑1                                                                                           TTTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGG        <  1:336698/101‑1                                                                                            TTCGCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGC       <  1:789913/101‑1                                                                                               GCTGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAA    >  1:1143378/1‑101                                                                                                 TGGTTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATT  <  2:1078483/101‑1                                                                                                                                                                                                       TTTCACATCGTTACGGAAAACGGTAACGCTGGATTCAACCCCTTCCAGCCAGCCTTCTTCACCCATGTAG‑TAAAGCCCCAGCTCCCAACTTTCGCTGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  12/44617‑44517 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATT  <  222/1442‑1348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.