New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	114	12107 =	60 (0.800)	28 (0.610) +GGAGCACGAATGTAGGCCGGATAAGGCGTTTA	20/136	1.4	57.9%	intergenic (–/–)	–/–	–/–
	?	129	= 13398	0 (0.000)					intergenic (–/–)	–/–	–/–

CCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  114/12154‑12107 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGCCGTTGGCCGGATTGCGCG  <  129/13398‑13302                                                 ||||||||||||||||||||||||||||||||                                                                                                  gtccgtgcgcTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGC                                                                              <  1:1424975/91‑1     gtgcgcTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTA                                                                          >  1:1059402/7‑101     gtgcgcTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTA                                                                          >  2:680312/7‑101        cgcTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACAT                                                                       <  2:1076751/98‑1        cgcTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACAT                                                                       <  2:1399958/98‑1          cTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAA                                                                     >  1:1713299/2‑101          cTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAA                                                                     <  2:54462/100‑1             CCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATT                                                                  >  1:1506353/1‑101                   GCGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAG                                                            <  1:1190066/101‑1                    CGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGG                                                           >  2:1325512/1‑101                      ACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAG                                                         <  2:449582/101‑1                         CTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTA                                                      >  2:1342351/1‑101                          TGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAA                                                     >  1:492599/1‑101                               CGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATG                                                <  1:879995/101‑1                               CGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATG                                                <  1:777709/101‑1                                GTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGG                                               >  1:1328408/1‑101                                GTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGG                                               >  2:688900/1‑101                                GTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGG                                               <  2:1102379/101‑1                                 TCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGA                                              <  1:1221733/101‑1                                  CTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGAT                                             <  1:1495479/101‑1                                    TATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCA                                           <  1:1304281/101‑1                                        AGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTA                                       <  2:1126662/101‑1                                         GGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTAC                                      <  1:680317/101‑1                                          GCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACC                                     <  2:1706166/101‑1                                           CCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCC                                    >  1:913274/1‑101                                            CTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCA                                   >  1:1333419/1‑101                                            CTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCA                                   >  2:970022/1‑101                                               CGGGAGCACGAATGGAGGCCGGATAAGGCTTTTACGCCGCATCCGGGAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGC                                >  2:1681644/1‑101                                                      ACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATT                         <  2:690910/101‑1                                                         AATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGG                      <  2:1616447/101‑1                                                          ATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGG                     >  2:104186/1‑101                                                           TGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGC                    <  2:976927/101‑1                                                               GGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGCCGTT                >  2:1273112/1‑101                                                                  CGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGCCGTTGGC             >  1:437699/1‑101                                                                     ATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGCCGTTGGCCGG          >  1:1532590/1‑101                                                                       AAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGCCGTTGGCCGGAT        >  1:1163454/1‑101                                                                           CGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGCCGTTGGCCGGATTGCG    <  2:1049169/101‑1                                                                            GTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGCCGTTGGCCGGATTGCGC   >  2:455576/1‑101                                                                             TTTACGCCGCATCCGGCAGCCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGCCGTTGGCCGGATTGCGCG  >  1:472719/1‑101                                                 ||||||||||||||||||||||||||||||||                                                                                                  CCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  114/12154‑12107 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGCCGTTGGCCGGATTGCGCG  <  129/13398‑13302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.