New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 105 15774 =48 (0.760)60 (1.190) 46/168 0.1 74.9% intergenic (–/–) –/– –/–
?155 = 9538 0 (0.000)intergenic (–/–) –/– –/–

‑‑‑‑GGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  105/15857‑15774
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacctcaccaaattgtTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACT  <  155/9538‑9439
                                                                                                                                                                                            
gaggGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGAC                                                                                         >  1:363690/5‑101
  ggGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCT                                                                                       >  2:1138028/3‑101
  ggGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCT                                                                                       >  2:62652/3‑101
      GGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACCCCTCACCAAATTGTTCTGTCGCCTGACCTCATG                                                                                   <  2:537171/101‑1
      GGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATG                                                                                   >  1:197075/1‑101
       GGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGG                                                                                  <  1:1552388/101‑1
        GATTCGAACCCCTGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGG                                                                                 <  2:1592958/101‑1
        GATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGG                                                                                 >  1:215511/1‑101
         ATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGG                                                                                <  2:474162/101‑1
           TCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGC                                                                              <  1:655343/101‑1
            CGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCA                                                                             <  1:992293/101‑1
             GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAA                                                                            >  2:1050991/1‑101
              AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAAC                                                                           >  1:1473251/1‑101
                CCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGG                                                                         <  2:316879/101‑1
                 CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGG                                                                        <  2:1125129/101‑1
                  CCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGG                                                                       <  1:700815/101‑1
                  CCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGG                                                                       <  2:247956/101‑1
                   CCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGC                                                                      >  2:1259479/1‑101
                     GATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGC                                                                    >  2:1536733/1‑101
                     GATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGC                                                                    >  1:1022418/1‑101
                       TACGTTCCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTA                                                                  <  1:815620/101‑1
                        ACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTAC                                                                 <  1:994467/101‑1
                         CGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACT                                                                >  2:505537/1‑101
                          GTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTA                                                               >  1:533621/1‑101
                           TTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTAT                                                              <  1:522507/101‑1
                            TGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATA                                                             >  1:127351/1‑101
                             GCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAG                                                            >  2:1146649/1‑101
                             GCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAG                                                            <  1:1353679/101‑1
                                GTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGA                                                         >  2:615691/1‑101
                                GTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGA                                                         <  2:465833/101‑1
                                  ATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGT                                                       >  1:1694661/1‑101
                                   TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTT                                                      >  1:199944/1‑101
                                   TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTT                                                      >  1:37831/1‑101
                                     CACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGG                                                    >  1:868284/1‑101
                                        ACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGT                                                 <  1:1621973/101‑1
                                             cgatctGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAAC                                            <  1:723105/95‑1
                                             CCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAAC                                            <  2:1644978/101‑1
                                             CCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAAC                                            <  1:1536739/101‑1
                                               AGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGG                                          >  2:1436858/1‑101
                                                 GCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTC                                        <  1:190151/101‑1
                                                  CGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCA                                       <  1:266605/101‑1
                                                  CGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCA                                       <  1:1682483/101‑1
                                                   GTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACagatcg                                      >  2:723100/1‑95
                                                    TGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAG                                     >  2:323830/1‑101
                                                    TGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAG                                     <  1:602192/101‑1
                                                    TGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAG                                     <  2:1016736/101‑1
                                                        CCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGA                                 >  2:1306929/1‑101
                                                        CCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGA                                 >  1:1639786/1‑101
                                                          TTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAAT                               <  1:806921/101‑1
                                                           TCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATT                              <  2:1105023/101‑1
                                                            CAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTT                             <  1:505542/101‑1
                                                               CCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAA                          <  1:1318984/101‑1
                                                               CCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAA                          <  1:651640/101‑1
                                                                 gCTCGGACACCTCAGCAAATTGTTTTGTCGCGTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATG                        <  1:87690/100‑1
                                                                 ACTCGGACACCTCACCAAATTGTTTTGTCGCCTGGCCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATG                        >  2:242106/1‑101
                                                                 ACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATG                        <  2:1473245/101‑1
                                                                  CTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGA                       <  1:637005/101‑1
                                                                   TCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGAT                      >  2:1330311/1‑101
                                                                   TCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGAT                      <  1:1534697/101‑1
                                                                       ACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATT                  >  1:995635/1‑101
                                                                         ACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTAT                >  2:1553149/1‑101
                                                                         ACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTAT                >  2:1214928/1‑101
                                                                           CTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTG              >  1:143902/1‑101
                                                                           CTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTG              <  1:615696/101‑1
                                                                            tctCCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGT             <  1:1138033/98‑1
                                                                            TCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGT             <  1:1321328/101‑1
                                                                             CACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTT            <  2:1694655/101‑1
                                                                             CACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTT            >  2:930098/1‑101
                                                                              ACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTT           >  2:1045695/1‑101
                                                                               CCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAATGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTG          <  2:693104/101‑1
                                                                               CCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTG          >  1:591739/1‑101
                                                                               CCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTG          >  2:655297/1‑101
                                                                                CAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGC         >  2:719904/1‑101
                                                                                CAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGC         >  1:343878/1‑101
                                                                                   ATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCA      <  1:1031028/101‑1
                                                                                   ATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCA      >  1:1544476/1‑101
                                                                                    TTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCAT     <  1:521212/101‑1
                                                                                      GTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATAC   <  1:1553155/101‑1
                                                                                       TTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACT  <  2:1123430/101‑1
                                                                                                                                                                                            
‑‑‑‑GGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  105/15857‑15774
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacctcaccaaattgtTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACT  <  155/9538‑9439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.