New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	102	1 =	0 (0.000)	38 (0.050) +GGTGATGCTGCCAACT	31/168	0.7	100%	intergenic (–/–)	–/–	–/–
	?	223	= 698	0 (0.000)					intergenic (–/–)	–/–	–/–

GGAACGTTCGGATGAAAATTGATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  102/99‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGA  <  223/698‑616                                                                                                    ||||||||||||||||                                                                                    GGAACGTTCGGATGAAAATTGATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGG                                                                                                   >  1:771017/1‑101   AACGTTCGGATGAAAATTGATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTG                                                                                                 <  1:725054/101‑1   AACGTTCGGATGAAAATTGATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTG                                                                                                 <  2:142240/101‑1   AACGTTCGGATGAAAATTGATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTG                                                                                                 >  1:919422/1‑101    ACGTTCGGATGAAAATTGATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGA                                                                                                >  2:273834/1‑101      GTTCGGATGAAAATTGATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATG                                                                                              <  2:596813/101‑1      GTTCGGATGAAAATTGATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATG                                                                                              >  2:737650/1‑101      GTTCGGATGAAAATTGATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATG                                                                                              <  2:788326/101‑1      GTTCGGATGAAAATTGATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAACCTCCATTCTCACAGTGAAACGTAACGCACTGAAAACGGGGGGATG                                                                                              >  2:1417611/1‑101         CGGATGAAAATTGATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTG                                                                                           >  2:335659/1‑101           GATGAAAATTGATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCC                                                                                         <  1:815578/101‑1           GATGAAAATTGATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCC                                                                                         <  1:1062810/101‑1            ATGAAAATTGATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCA                                                                                        >  2:1057777/1‑101            ATGAAAATTGATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCA                                                                                        >  1:993789/1‑101                   TTGATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACT                                                                                 <  2:1173345/101‑1                   TTGATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACT                                                                                 <  2:1714273/101‑1                     GATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGA                                                                               >  1:591718/1‑101                        CCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTT                                                                            >  2:925480/1‑101                         CTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTA                                                                           >  1:740356/1‑101                           TTCCAGGCTTAGACCAGGGTGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGT                                                                         <  2:533471/101‑1                               AGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTAT                                                                     >  2:217811/1‑101                                  CTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGAT                                                                  >  1:1113647/1‑101                                     AGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGT                                                               >  2:436556/1‑101                                     AGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGT                                                               >  2:1267133/1‑101                                         CAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTT                                                           >  2:389282/1‑101                                         CAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTT                                                           <  1:273834/101‑1                                         CAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTT                                                           <  1:1452942/101‑1                                           GGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTT                                                         >  1:1022185/1‑101                                           GGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTT                                                         <  1:1253970/101‑1                                           GGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTT                                                         <  2:854372/101‑1                                           GGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTT                                                         <  1:631054/101‑1                                              TGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAG                                                      <  2:586253/101‑1                                               GGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGG                                                     >  1:615207/1‑101                                                  GGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGCACTGAAAACGGGGAGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGC                                                  >  1:1065162/1‑101                                                       GGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAG                                             <  1:1201684/101‑1                                                         GCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTG                                           >  1:619041/1‑101                                                          CAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGG                                          >  2:32614/1‑101                                                          CAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGG                                          <  2:919417/101‑1                                                            ATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCT                                        >  1:871023/1‑101                                                               TCCATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCT                                     <  1:777151/101‑1                                                                  ATTCTCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTT                                  >  2:62009/1‑101                                                                      TCACAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTA                              <  2:1113642/101‑1                                                                         CAGTGAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCA                           >  1:1426841/1‑101                                                                             GAAACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTG                       <  2:1065157/101‑1                                                                                ACGTAACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCC                    >  2:788764/1‑101                                                                                    AACGTACTGAAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCC                >  2:519717/1‑101                                                                                             AAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCT       >  1:1611732/1‑101                                                                                             AAAACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCT       <  2:1005734/101‑1                                                                                                ACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACT    <  1:1057782/101‑1                                                                                                ACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACT    <  2:91044/101‑1                                                                                                ACGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACT    <  2:1426835/101‑1                                                                                                  GGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGA  >  2:303299/1‑101                                                                                                    ||||||||||||||||                                                                                    GGAACGTTCGGATGAAAATTGATCCTTTCCAGGCTTAGACCAGGATGGCGGGATGGGCAATCTCCATTCTCACAGTGAAACGTAACGTACTGAAAACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  102/99‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGA  <  223/698‑616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.