New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	101	= 16326	0 (0.000)	64 (1.120)	46/168	0.0	76.6%	intergenic (–/–)	–/–	–/–
	?	178	= 5270	39 (0.590)					intergenic (–/–)	–/–	–/–

AATTTCAACGGCCTGTTTAATTTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  101/16212‑16326 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatcttacccagcaaTAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCC  <  178/5270‑5172                                                                                                                                                                                                                        AATTTCAACGGCCTGTTTAATTTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTG                                                                                                                   >  2:410972/1‑101  ATTTCAACGGCCTGTTTAATTTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGCAAACTGA                                                                                                                  >  2:462918/1‑101  ATTTCAACGGCCTGTTTAATTTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGA                                                                                                                  >  2:70250/1‑101  ATTTCAACGGCCTGTTTAATTTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGA                                                                                                                  >  2:599316/1‑101   TTTCAACGGCCTGTTTAATTTCGTCCGCCGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGAT                                                                                                                 <  2:290530/101‑1     TCAACGGCCTGTTTAATTTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCT                                                                                                               <  1:1524037/101‑1     TCAACGGCCTGTTTAATTTCGTCCGCAGTTAGCGCATTAAGTGGGGGAGGGGGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCT                                                                                                               >  2:1385232/1‑101       AACGGCCTGTTTAATTTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTA                                                                                                             >  1:323216/1‑101          GGCCTGTTTAATTTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCC                                                                                                          >  2:920767/1‑101             CTGTTTAATTTCGTCCGCGGTTAGCGCGTTAAGTGGGTGACGGCGCTTTTCTACCTGAAAGGCTTGATCCAGCCCGGACTGGAAAACTGATCTTACGCAGC                                                                                                       >  2:558918/1‑101             CTGTTTAATTTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGC                                                                                                       >  1:707695/1‑101             CTGTTTAATTTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGC                                                                                                       >  1:1234682/1‑101              TGTTTAATTTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCA                                                                                                      <  2:1602822/101‑1                  TAATTTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCTCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAG                                                                                                  <  2:1642544/101‑1                  TAATTTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAG                                                                                                  <  2:200070/101‑1                    ATTTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTG                                                                                                >  2:596589/1‑101                    ATTTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTG                                                                                                >  1:712568/1‑101                    ATTTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTG                                                                                                <  2:1362846/101‑1                    ATTTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTG                                                                                                >  1:1234580/1‑101                      TTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGA                                                                                              <  1:1467311/101‑1                         GTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACAC                                                                                           <  2:347311/101‑1                          TCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCGTTTCTATCTGAAAGGTTTGATCCAGCCCGGACTGGGAAACTGATCTTACGCAGCAATAGTGGAGACG                                                                                          >  2:482137/1‑101                              CAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGC                                                                                      <  1:202388/101‑1                                GTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTA                                                                                    >  1:291604/1‑101                                  TAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAG                                                                                  <  1:590579/101‑1                                     CGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGA                                                                               <  2:956949/101‑1                                     CGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGA                                                                               <  2:1645661/101‑1                                      GCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAG                                                                              <  2:1234575/101‑1                                      GCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAG                                                                              <  2:808509/101‑1                                      GCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAG                                                                              <  2:1030035/101‑1                                            AGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT                                                                        <  1:1649552/101‑1                                             GTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTC                                                                       >  2:1256588/1‑101                                             GTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTC                                                                       >  2:1283850/1‑101                                              TGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCT                                                                      <  2:1025242/101‑1                                              TGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCT                                                                      <  1:920772/101‑1                                              TGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCT                                                                      <  2:295808/101‑1                                               GGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTC                                                                     <  2:776650/101‑1                                                 GTGAGGGCGCTTTTCTGCCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAG                                                                   <  1:943323/101‑1                                                 GTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAG                                                                   <  1:841786/101‑1                                                  TGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGT                                                                  >  1:585852/1‑101                                                  TGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGT                                                                  >  1:116638/1‑101                                                  TGAGGGCGCTTGTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACGGATCTTACCCAGTAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGT                                                                  <  2:1006109/101‑1                                                      GGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGA                                                              >  2:1089357/1‑101                                                         GCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGT                                                           >  2:984048/1‑101                                                            TTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAC                                                        >  2:230434/1‑101                                                             TTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACT                                                       >  2:1640965/1‑101                                                             TTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACT                                                       <  2:1157291/101‑1                                                             TTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACT                                                       <  2:1442334/101‑1                                                                TACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCAC                                                    >  2:1486207/1‑101                                                                  CCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAT                                                  <  1:599321/101‑1                                                                  CCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAT                                                  >  2:1146579/1‑101                                                                   CTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATG                                                 >  1:1571986/1‑101                                                                   CTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATG                                                 >  1:1444053/1‑101                                                                     GAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAC                                               >  2:1398322/1‑101                                                                     GAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAC                                               <  2:116638/101‑1                                                                     GAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAC                                               >  2:98264/1‑101                                                                      AAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACA                                              >  1:1462383/1‑101                                                                        AGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAA                                            <  1:69140/101‑1                                                                          GTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAA                                          >  2:1230343/1‑101                                                                             TGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAG                                       <  1:1256593/101‑1                                                                             TGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAG                                       <  2:291604/101‑1                                                                               ATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTA                                     <  2:724297/101‑1                                                                                tcaAGCCCGGCCTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAT                                    <  1:462923/98‑1                                                                                TCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAT                                    <  2:427346/101‑1                                                                                TCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAT                                    <  1:151507/101‑1                                                                                  CAGCCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCA                                  <  1:1337426/101‑1                                                                                  CAGCCCGGACTGGAAAACTGATATTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCA                                  >  1:1029446/1‑101                                                                                     CCCGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACC                               >  2:1651574/1‑101                                                                                       CGGACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAG                             <  2:1234677/101‑1                                                                                          ACTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAA                          <  1:907355/101‑1                                                                                           CTGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAA                         >  2:410360/1‑101                                                                                            TGGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAA                        >  1:760600/1‑101                                                                                             GGAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAA                       >  1:1311966/1‑101                                                                                              GAAAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAA                      <  2:774377/101‑1                                                                                                AAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACC                    <  2:1579250/101‑1                                                                                                  ACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCC                  <  1:1640971/101‑1                                                                                                  ACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCC                  <  1:1219255/101‑1                                                                                                                  AATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCC  <  1:677316/101‑1                                                                                                                                                                                                                        AATTTCAACGGCCTGTTTAATTTCGTCCGCAGTTAGCGCATTAAGTGGGTGAGGGCGCTTTTCTACCTGAAAGGTTTGATCCAGCCCGGACTGGAAAACTGATCTTACCCAGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  101/16212‑16326 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatcttacccagcaaTAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCC  <  178/5270‑5172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.