New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 10 = 47545 (0.070)79 (0.050) 57/200 0.2 96.9% intergenic (–/–) –/– –/–
?222 = 1443 0 (0.000)intergenic (–/–) –/– –/–

CTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  10/4655‑4754
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCT  <  222/1443‑1346
                                                                                                                                                                                                      
CTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTAT                                                                                                   <  1:1398239/101‑1
CTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTAT                                                                                                   <  2:1426333/101‑1
CTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTAT                                                                                                   <  2:58374/101‑1
 TACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATG                                                                                                  >  1:1196018/1‑101
  ACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGT                                                                                                 >  1:974474/1‑101
   CCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTA                                                                                                <  1:423412/101‑1
   CCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTA                                                                                                <  1:1582246/101‑1
   CCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTA                                                                                                >  1:878739/1‑101
   CCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTA                                                                                                >  2:204902/1‑101
     ATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACT                                                                                              >  2:1078788/1‑101
     ATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACT                                                                                              <  1:1363937/101‑1
     ATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACT                                                                                              <  2:1510321/101‑1
     ATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACT                                                                                              >  2:854091/1‑101
     ATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACT                                                                                              <  1:1393713/101‑1
         TCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACC                                                                                          >  2:33283/1‑101
              AGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACTCCAAA                                                                                     >  1:1653877/1‑101
               GACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAA                                                                                    <  1:211313/101‑1
                  CCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGT                                                                                 >  2:1247605/1‑101
                    ATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGCCCCCAAAAAGATG                                                                               >  2:647183/1‑101
                    ATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTG                                                                               >  2:1663368/1‑101
                    ATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTG                                                                               >  2:886695/1‑101
                    ATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTG                                                                               >  2:312285/1‑101
                       AGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGAC                                                                            <  2:1195005/101‑1
                            ATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTA                                                                       <  1:966503/101‑1
                            ATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGCATGTACTGACCCCAAAAAGTTGGACAGTTA                                                                       >  1:1020600/1‑101
                             TCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAA                                                                      >  1:56353/1‑101
                               GACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAAC                                                                    >  2:951391/1‑101
                                ACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACA                                                                   <  1:912150/101‑1
                                 CAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACAC                                                                  <  2:1630693/101‑1
                                  AGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACG                                                                 >  1:922672/1‑101
                                    AACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG                                                               <  1:1554422/101‑1
                                    AACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG                                                               >  2:527496/1‑101
                                     ACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG                                                              <  1:1685255/101‑1
                                       GCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA                                                            >  2:809503/1‑101
                                         AGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA                                                          >  1:690891/1‑101
                                          GTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATAT                                                         <  1:788565/101‑1
                                          GTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATAT                                                         <  1:737156/101‑1
                                            TGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG                                                       >  1:1040571/1‑101
                                              ATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT                                                     <  2:325156/101‑1
                                               TGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC                                                    >  2:846106/1‑101
                                                 CGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTG                                                  <  1:510462/101‑1
                                                 CGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTG                                                  <  2:1552040/101‑1
                                                 CGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTG                                                  <  2:913591/101‑1
                                                 CGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTG                                                  <  2:878734/101‑1
                                                  GTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGA                                                 >  1:1166636/1‑101
                                                  GTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGA                                                 >  2:1407191/1‑101
                                                      CTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCC                                             >  1:500106/1‑101
                                                          ACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATA                                         >  1:1315226/1‑101
                                                          ACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATA                                         >  2:192709/1‑101
                                                            TAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATT                                       <  2:362197/101‑1
                                                            TAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATT                                       <  2:1617308/101‑1
                                                              AACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCA                                     <  1:115561/101‑1
                                                              AACCGAAAAAATGAGTGGTCTGGCGGAAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCA                                     >  1:1211697/1‑101
                                                                 CGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATT                                  <  2:1420202/101‑1
                                                                    AAAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGA                               <  2:1593983/101‑1
                                                                     AAAATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAG                              <  2:898070/101‑1
                                                                        ATGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCA                           <  2:785032/101‑1
                                                                         TGAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAG                          <  2:930219/101‑1
                                                                          GAGTGGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGA                         <  2:935514/101‑1
                                                                              GGTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTT                     >  2:1113984/1‑101
                                                                               GTCTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTT                    >  2:229603/1‑101
                                                                                 CTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTA                  <  1:1276687/101‑1
                                                                                 CTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTA                  >  2:1100684/1‑101
                                                                                 CTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTA                  >  2:1584698/1‑101
                                                                                 CTGGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTA                  <  2:897586/101‑1
                                                                                   GGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAAT                <  1:1193270/101‑1
                                                                                   GGCGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAAT                <  1:1710898/101‑1
                                                                                     CGGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTT              >  1:68645/1‑101
                                                                                      GGTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTC             <  1:1300418/101‑1
                                                                                       GTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCA            >  2:251670/1‑101
                                                                                       GTAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCA            >  1:408737/1‑101
                                                                                        TAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAG           <  1:1247610/101‑1
                                                                                        TAGCCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAG           <  1:286205/101‑1
                                                                                           CCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCT        >  2:218745/1‑101
                                                                                           CCCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCT        <  1:1172024/101‑1
                                                                                            CCCGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTA       <  1:1000262/101‑1
                                                                                               GCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATT    <  1:761471/101‑1
                                                                                                 GTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCT  <  1:1613170/101‑1
                                                                                                 GTATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCT  >  2:1624202/1‑101
                                                                                                                                                                                                      
CTACCATGATCCGCAGACCCATGAGTTTATCGACAGAACGCAGTTGATGCGTAGCTACACTAAACCGAAAAAATGAGTGGTCTGGCGGTAGCCCCGCGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  10/4655‑4754
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCT  <  222/1443‑1346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.