New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	3697156 =	NA (NA)	84 (1.310)	66/200	0.0	NA	coding (280/4134 nt)	rhsA	rhsA element core protein RshA
	?	REL606	3893553 =	NA (NA)					intergenic (+8/‑48)	kup/insJ‑5	potassium transporter/IS150 hypothetical protein

CAGGTGCTCAAAATACAGGCTTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3697254‑3697156 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACT  >  REL606/3893553‑3893652                                                                                                                                                                                                         CAGGTGCTCAAAATACAGGCTTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCT                                                                                                    <  1:734771/101‑1  AGGTGCTCAAAATACAGGCTTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTG                                                                                                   >  2:212619/1‑101    GTGCTCAAAATACAGGCTTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTA                                                                                                 >  1:251750/1‑101    GTGCTCAAAATACAGGCTTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTA                                                                                                 >  2:697967/1‑101     TGCTCAAAATACAGGCTTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTAC                                                                                                <  1:395678/101‑1     TGCTCAAAATACAGGCTTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTAC                                                                                                >  2:490119/1‑101     TGCTCAAAATACAGGCTTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTAC                                                                                                <  2:110352/101‑1     TGCTCAAAATACAGGCTTCTGCCGCCGTTAACTCTGAGTAACCGGGAGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTAC                                                                                                >  2:931992/1‑101      GCTCAAAATACAGGCTTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACT                                                                                               >  1:808384/1‑101       CTCAAAATACAGGCTTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTG                                                                                              >  1:327075/1‑101          AAAATACAGGCTTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCAC                                                                                           >  1:537189/1‑101           AAATACAGGCTTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACC                                                                                          <  2:1378256/101‑1              TACAGGCTTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCAT                                                                                       >  2:640345/1‑101                 AGGCTTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTT                                                                                    <  2:209877/101‑1                 AGGCTTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTT                                                                                    >  2:1192604/1‑101                    CTTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTT                                                                                 >  2:144094/1‑101                     TTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTG                                                                                <  1:997849/101‑1                     TTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTG                                                                                <  1:490124/101‑1                      TCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGG                                                                               >  1:1387138/1‑101                          CCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGA                                                                           >  1:351952/1‑101                           tGCCGTTGTCTCTGAGTATCAGTGGTTTATCGCGCACCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCTATTTTGTTGGACGAT                                                                          <  2:1231757/100‑1                           CGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGAT                                                                          >  2:1569294/1‑101                             CCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGA                                                                        <  1:640350/101‑1                               GTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAA                                                                      >  1:288044/1‑101                               GTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAA                                                                      >  1:979196/1‑101                                 TATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATG                                                                    >  1:1119019/1‑101                                     ACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT                                                                >  2:1532064/1‑101                                      CTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA                                                               <  2:731259/101‑1                                       TGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG                                                              <  1:1192609/101‑1                                          GTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCC                                                           >  2:802016/1‑101                                           TATCAGGGTGTTATCGCGCAGCTGGAAGCGGGTATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCC                                                          >  2:165045/1‑101                                            ATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT                                                         <  1:5315/101‑1                                            ATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT                                                         >  2:1317187/1‑101                                               agcGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT                                                      >  2:1491817/4‑101                                                 TGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT                                                    >  1:673973/1‑101                                                  GTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG                                                   >  2:545000/1‑101                                                  GTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG                                                   <  1:545005/101‑1                                                   TGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGT                                                  <  2:701090/101‑1                                                   TGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGT                                                  <  2:1366354/101‑1                                                    GTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTC                                                 >  2:395506/1‑101                                                      TATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAA                                               <  2:4041/101‑1                                                      TATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAA                                               >  1:57505/1‑101                                                         CGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGC                                            <  1:152407/101‑1                                                           CGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCA                                          <  1:210335/101‑1                                                           CGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCA                                          <  2:825644/101‑1                                                            GCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAACTGGAATAGCCCCTAATATGTCAAAGCCAA                                         >  1:976062/1‑101                                                               GCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAAT                                      <  1:697972/101‑1                                                                CTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATA                                     >  2:421997/1‑101                                                                CTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATA                                     <  1:687749/101‑1                                                                CTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATA                                     >  2:1555091/1‑101                                                                 TGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAC                                    >  2:593746/1‑101                                                                    AAGCGGATATCCGCAGGCATTTTCCAGCCGTGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATGCCCT                                 <  1:364345/101‑1                                                                     AGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTT                                <  1:942774/101‑1                                                                       CGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTT                              <  1:1387814/101‑1                                                                        GGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTG                             <  1:1695753/101‑1                                                                         GATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGA                            <  2:47345/101‑1                                                                            ATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAA                         >  2:444423/1‑101                                                                              CCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGC                       <  2:1119014/101‑1                                                                               CGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGTAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCG                      >  2:1364981/1‑101                                                                               CGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCG                      <  2:819787/101‑1                                                                               CGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCG                      <  2:351952/101‑1                                                                                GCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGC                     >  1:777998/1‑101                                                                                  AGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGCTGAAATGGAATAACGCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAACGCCT                   >  2:194470/1‑101                                                                                  AGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCT                   >  1:277499/1‑101                                                                                   GGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTT                  <  2:221912/101‑1                                                                                     CATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGA                >  2:1055032/1‑101                                                                                      ATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAA               >  1:1573903/1‑101                                                                                      ATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAA               >  1:1542808/1‑101                                                                                      ATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAA               >  1:302677/1‑101                                                                                      ATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAA               >  2:782479/1‑101                                                                                      ATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAA               >  1:1688514/1‑101                                                                                       TTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAG              <  2:327075/101‑1                                                                                         TTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTC            <  1:462792/101‑1                                                                                           CCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGT          >  2:213756/1‑101                                                                                            CAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTG         >  1:617814/1‑101                                                                                             AGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGA        <  2:57812/101‑1                                                                                             AGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGA        >  1:989006/1‑101                                                                                             AGCCCGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAGCCATTTGAAAAGCGCCTTGAGGTCGTGA        >  2:1398930/1‑101                                                                                                CGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATC     >  1:493517/1‑101                                                                                                CGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATC     >  1:367832/1‑101                                                                                                  GGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCAC   >  1:337514/1‑101                                                                                                  GGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCAC   <  2:271793/101‑1                                                                                                   GCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACT  <  2:263790/101‑1                                                                                                   GCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACT  <  2:979191/101‑1                                                                                                                                                                                                         CAGGTGCTCAAAATACAGGCTTCTGCCGCCGTTATCACTGAGTATCAGTGTGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3697254‑3697156 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACT  >  REL606/3893553‑3893652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.