| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | REL606 | 4,101,091 | T→C | 100% | E47G (GAA→GGA) | hslU ← | ATP‑dependent protease ATP‑binding subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 4,101,091 | 0 | T | C | 100.0% | 442.4 / NA | 115 | E47G (GAA→GGA) | hslU | ATP‑dependent protease ATP‑binding subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (68/47); total (68/47) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 115 total aligned reads displayed.
TTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGC > REL606/4101043‑4101138 | ttACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCa > 1:5075382/1‑51 (MQ=255)ttACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCa > 1:9388092/1‑51 (MQ=255)ttACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCa > 1:1609876/1‑51 (MQ=255)ttACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCa > 1:3960079/1‑51 (MQ=255)ttACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCa < 1:7540830/51‑1 (MQ=255) tACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCAt > 1:10543777/1‑51 (MQ=255) tACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCAt > 1:5051494/1‑51 (MQ=255) aCCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATg < 1:8596015/51‑1 (MQ=255) aCCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATg > 1:1817000/1‑51 (MQ=255) aCCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATg > 1:5098141/1‑51 (MQ=255) ccGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATgg < 1:28769/51‑1 (MQ=255) gACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATg > 1:3141976/1‑48 (MQ=255) gACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGgcg > 1:4664941/1‑51 (MQ=255) gACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGgcg > 1:7017789/1‑51 (MQ=255) acacCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGgcgc > 1:7099277/1‑51 (MQ=255) cacCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCa < 1:4029006/51‑1 (MQ=255) cacCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCa < 1:6039546/51‑1 (MQ=255) cacCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCa > 1:3668404/1‑51 (MQ=255) cacCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCa > 1:3150011/1‑51 (MQ=255) cacCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCa > 1:722238/1‑51 (MQ=255) acCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAg > 1:1798786/1‑51 (MQ=255) ccGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGc > 1:6015414/1‑51 (MQ=255) cGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGct > 1:3422514/1‑51 (MQ=255) ggTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGctc > 1:1998590/1‑51 (MQ=255) ggTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGctc > 1:891411/1‑51 (MQ=255) ggTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGctc > 1:2553991/1‑51 (MQ=255) gTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGctct < 1:5689911/51‑1 (MQ=255) tCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCtt < 1:10365463/51‑1 (MQ=255) cGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCa > 1:267221/1‑44 (MQ=255) cGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTc < 1:131930/51‑1 (MQ=255) gggCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCg < 1:2190730/51‑1 (MQ=255) gggCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCg > 1:7705482/1‑51 (MQ=255) gggCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCg < 1:8369606/51‑1 (MQ=255) gggCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCg < 1:7020121/51‑1 (MQ=255) gCCGATCATCAGGATATTTTTCGGGGTCACTCCa < 1:7402324/34‑1 (MQ=255) gCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGtt > 1:9616752/1‑51 (MQ=255) ccGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTg > 1:368131/1‑51 (MQ=255) ccGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTg < 1:10651910/51‑1 (MQ=255) cGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGa < 1:10053172/51‑1 (MQ=255) cGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGa < 1:1220417/51‑1 (MQ=255) gATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAg > 1:8387499/1‑51 (MQ=255) gATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAg < 1:7131747/51‑1 (MQ=255) gATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAg > 1:2836863/1‑51 (MQ=255) atcatcAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGc < 1:1897663/51‑1 (MQ=255) atcatcAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGc < 1:5710140/51‑1 (MQ=255) atcatcAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGc > 1:3852705/1‑51 (MQ=255) tcatcaGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGc > 1:5748209/1‑50 (MQ=255) tcatcaGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCt > 1:7975861/1‑51 (MQ=255) tcatcaGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCt > 1:9518830/1‑51 (MQ=255) tcatcaGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCt < 1:8803035/51‑1 (MQ=255) catcaGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTg < 1:6912009/51‑1 (MQ=255) atcaGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGc > 1:5477170/1‑51 (MQ=255) tcaGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCa > 1:1660016/1‑51 (MQ=255) tcaGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCa < 1:8002243/51‑1 (MQ=255) caGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCAt > 1:10610218/1‑51 (MQ=255) caGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCAt < 1:10600076/51‑1 (MQ=255) caGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGAAt < 1:4099542/51‑1 (MQ=255) aGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATg < 1:2571734/51‑1 (MQ=255) aGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATg < 1:4288100/51‑1 (MQ=255) aGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATg > 1:8893543/1‑51 (MQ=255) aGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATg > 1:1961893/1‑51 (MQ=255) aGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATg > 1:3417744/1‑51 (MQ=255) ggATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGc < 1:4905850/51‑1 (MQ=255) ggATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGc > 1:5470047/1‑51 (MQ=255) ggATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGc < 1:7159143/51‑1 (MQ=255) ggATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGc < 1:3499528/51‑1 (MQ=255) ggATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGc > 1:5944148/1‑51 (MQ=255) gATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGc < 1:6631137/50‑1 (MQ=255) gATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCg > 1:6080204/1‑51 (MQ=255) gATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCg < 1:4499009/51‑1 (MQ=255) gATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCg < 1:9594347/51‑1 (MQ=255) atatTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGa < 1:3964471/51‑1 (MQ=255) tatTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGAc < 1:4792333/51‑1 (MQ=255) tatTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGAc > 1:10787249/1‑51 (MQ=255) tatTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCAAc < 1:4699875/51‑1 (MQ=255) atTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACg > 1:10229541/1‑51 (MQ=255) tttttCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGc > 1:5736382/1‑51 (MQ=255) ttttCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCg > 1:4057462/1‑46 (MQ=255) tttCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCa > 1:3364602/1‑51 (MQ=255) tttCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCa < 1:5074225/51‑1 (MQ=255) ttCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAg > 1:2139308/1‑51 (MQ=255) ttCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAg > 1:10416287/1‑51 (MQ=255) tCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGc > 1:10680667/1‑51 (MQ=255) tCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGc > 1:10754897/1‑51 (MQ=255) tCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGc > 1:5535896/1‑51 (MQ=255) tCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGc < 1:2369548/51‑1 (MQ=255) cGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCg > 1:1726008/1‑51 (MQ=255) ggggTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCgg < 1:3882318/51‑1 (MQ=255) ggggTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCgg > 1:6200325/1‑51 (MQ=255) ggggTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCgg > 1:3071251/1‑51 (MQ=255) gggTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGt > 1:6184832/1‑51 (MQ=255) gggTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGt < 1:6585413/51‑1 (MQ=255) cACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACg > 1:10140601/1‑51 (MQ=255) aCTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACg > 1:4617972/1‑50 (MQ=255) aCTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGc < 1:7142044/51‑1 (MQ=255) aCTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGc > 1:2473988/1‑51 (MQ=255) aCTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGc > 1:876366/1‑51 (MQ=255) aCTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGc > 1:4999801/1‑51 (MQ=255) aCTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGc < 1:6075512/51‑1 (MQ=255) aCTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGc < 1:5112892/51‑1 (MQ=255) | TTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGC > REL606/4101043‑4101138 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |