| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | REL606 | 3,271,926 | T→C | 100% | D38G (GAC→GGC) | yrbA ← | predicted DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,271,926 | 0 | T | C | 100.0% | 512.1 / NA | 132 | D38G (GAC→GGC) | yrbA | predicted DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (80/52); total (80/52) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 136 total aligned reads displayed.
ATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCC > REL606/3271878‑3271972 | aTCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCa > 1:10370039/1‑51 (MQ=255) tCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCaa > 1:7393705/1‑51 (MQ=255) tCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCaa < 1:2664893/51‑1 (MQ=255) tCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCaa < 1:2505957/51‑1 (MQ=255) cAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCaaa < 1:6523752/51‑1 (MQ=255) cAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCaaa > 1:4426917/1‑51 (MQ=255) aGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAaac < 1:4145237/51‑1 (MQ=255) aGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAaac > 1:10741089/1‑51 (MQ=255) cGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAaacaa > 1:1865255/1‑51 (MQ=255) ggACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAaacaac > 1:10852902/1‑51 (MQ=255) ggACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAaacaac > 1:10403070/1‑51 (MQ=255) ggACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAaacaac < 1:10664376/51‑1 (MQ=255) ggACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAaacaac > 1:9421325/1‑51 (MQ=255) ggACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAaacaac > 1:974488/1‑51 (MQ=255) gACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACt > 1:8001107/1‑51 (MQ=255) ccATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCa < 1:677691/51‑1 (MQ=255) ccATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCa > 1:8082612/1‑51 (MQ=255) ccATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCa < 1:393521/51‑1 (MQ=255) ccATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCa > 1:7558565/1‑51 (MQ=255) cATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCAc > 1:962643/1‑51 (MQ=255) cATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCAc < 1:7800742/51‑1 (MQ=255) cATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCAc > 1:4841305/1‑51 (MQ=255) cATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCAc > 1:4264094/1‑51 (MQ=255) cATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCAc > 1:86051/1‑51 (MQ=255) tAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCAccc > 1:10173089/1‑51 (MQ=255) ccGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACgg < 1:1092956/51‑1 (MQ=255) ccGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACgg < 1:6019721/51‑1 (MQ=255) cGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGc > 1:9248201/1‑51 (MQ=255) cGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGc < 1:7496504/51‑1 (MQ=255) cGTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGc > 1:5812016/1‑51 (MQ=255) gTCTGCTGTTTTTTAACCCGACTCATGTCGCCAAACAACTCACCCACGGCa > 1:5877958/1‑51 (MQ=255) gTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCa > 1:2183982/1‑51 (MQ=255) gTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCa > 1:2869875/1‑51 (MQ=255) gTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCa > 1:10352528/1‑51 (MQ=255) gTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCa < 1:4305330/51‑1 (MQ=255) gTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCa > 1:10758053/1‑51 (MQ=255) gTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCa > 1:9061733/1‑51 (MQ=255) gTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCa < 1:5735507/51‑1 (MQ=255) gTCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCa < 1:4645377/51‑1 (MQ=255) tCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCaa < 1:3795284/51‑1 (MQ=255) tCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCaa > 1:1632700/1‑51 (MQ=255) tCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCaa > 1:7059253/1‑51 (MQ=255) tCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCaa < 1:7173515/51‑1 (MQ=255) tCTGCTGTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCaa > 1:2814865/1‑51 (MQ=255) ctgctgTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAAt < 1:9630225/51‑1 (MQ=255) ctgctgTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAAt > 1:7214779/1‑51 (MQ=255) ctgctgTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAAt > 1:5302507/1‑51 (MQ=255) tgctgTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAATa > 1:10046521/1‑51 (MQ=255) tgctgTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAATa < 1:2195672/51‑1 (MQ=255) tgctgTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAATa > 1:3546307/1‑51 (MQ=255) tgctgTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAATa < 1:1393931/51‑1 (MQ=255) gctgTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAATaa > 1:8969091/1‑51 (MQ=255) ctgTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAATAAc > 1:7342180/1‑51 (MQ=255) tgTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAATAAcc > 1:1945196/1‑51 (MQ=255) tgTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAATAAcc > 1:3788399/1‑51 (MQ=255) gTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAATAACCt < 1:6514456/51‑1 (MQ=255) gTTTTTTAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAATAACCt > 1:9718437/1‑51 (MQ=255) tttttAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGa < 1:4783372/51‑1 (MQ=255) tttttAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGa < 1:7740486/51‑1 (MQ=255) tttttAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGa > 1:7617119/1‑51 (MQ=255) tttAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGaaa < 1:4442981/51‑1 (MQ=255) tttAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGaaa > 1:3902197/1‑51 (MQ=255) tAACCCGACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGt < 1:5560791/51‑1 (MQ=255) aaCCCGACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTg > 1:8238366/1‑51 (MQ=255) aaCCCGACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTg < 1:7063542/51‑1 (MQ=255) aaCCCGACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTg < 1:1222798/51‑1 (MQ=255) aCCCGACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTgg < 1:4729192/51‑1 (MQ=255) aCCCGACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTgg < 1:9525647/51‑1 (MQ=255) ccGACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCt > 1:3232181/1‑51 (MQ=255) ccGACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCt > 1:2659515/1‑51 (MQ=255) cGACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTg < 1:1785693/51‑1 (MQ=255) cGACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTg < 1:1384205/51‑1 (MQ=255) cGACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTg > 1:3151248/1‑51 (MQ=255) gACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGc > 1:1186556/1‑51 (MQ=255) gACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGc > 1:6033472/1‑51 (MQ=255) gACTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGc > 1:747184/1‑51 (MQ=255) aCTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGcc > 1:5231832/1‑51 (MQ=255) aCTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGcc > 1:311257/1‑51 (MQ=255) aCTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGcc < 1:6797151/51‑1 (MQ=255) aCTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGcc > 1:10592952/1‑51 (MQ=255) cTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCa < 1:5247191/51‑1 (MQ=255) cTCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCa > 1:2013154/1‑51 (MQ=255) cTCATGCCGCCAAACAACTCACCCACGCCAATAACCTGAAAGTGGCTGCCa > 1:2863050/1‑51 (MQ=255) tCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCAt > 1:9161206/1‑51 (MQ=255) tCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCAt > 1:3494499/1‑51 (MQ=255) tCATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCAt < 1:6259092/51‑1 (MQ=255) cATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATc > 1:5478226/1‑51 (MQ=255) cATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATc < 1:8915299/51‑1 (MQ=255) cATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATc < 1:6793350/51‑1 (MQ=255) cATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATc > 1:356548/1‑51 (MQ=255) cATGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATc > 1:9209177/1‑51 (MQ=255) aTGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATc > 1:8634565/1‑50 (MQ=255) aTGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCg < 1:9091725/51‑1 (MQ=255) aTGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCg > 1:1970726/1‑51 (MQ=255) aTGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCg > 1:7059529/1‑51 (MQ=255) tGCCGCCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGc > 1:7152253/1‑51 (MQ=255) gccgccAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGcc > 1:1115225/1‑51 (MQ=255) gccgccAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGcc > 1:8462615/1‑51 (MQ=255) gccgccAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGcc < 1:1288517/51‑1 (MQ=255) gccgccAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGcc < 1:5597231/51‑1 (MQ=255) | ATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCC > REL606/3271878‑3271972 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |