Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 239,002 | A→C | 100% | A4A (GCA→GCC) | dnaQ → | DNA polymerase III subunit epsilon |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 239,002 | 0 | A | C | 100.0% | 401.2 / NA | 104 | A4A (GCA→GCC) | dnaQ | DNA polymerase III subunit epsilon |
Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (47/57); total (47/57) | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 104 total aligned reads displayed.
GAACTGTAAAACGATAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTATGAACCA > REL606/238954‑239049 | gAACTGTAAAACGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCAt < 1:4033026/51‑1 (MQ=255) gAACTGTAAAACGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCAt < 1:8799622/51‑1 (MQ=255) gAACTGTAAAACGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCAt < 1:2701599/51‑1 (MQ=255) gAACTGTAAAACGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCAt < 1:3152672/51‑1 (MQ=255) aaCTGTAAAACGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCAtt > 1:10445092/1‑51 (MQ=255) aaCTGTAAAACGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCAtt < 1:4767848/51‑1 (MQ=255) cTGTAAAACGATAAGTCTGACATAAATGACCTCTATGAGCACTGCCATTac < 1:10891914/51‑1 (MQ=38) cTGTAAAACGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTac > 1:503431/1‑51 (MQ=255) tGTAAAACGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTaca > 1:946680/1‑51 (MQ=255) tGTAAAACGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTaca > 1:7528479/1‑51 (MQ=255) tGTAAAACGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTac > 1:10296399/1‑50 (MQ=255) tGTAAAACAATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTaca > 1:9363666/1‑51 (MQ=255) gTAAAACGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTacac < 1:3618310/51‑1 (MQ=255) gTAAAACGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTacac > 1:6067453/1‑51 (MQ=255) tAAAACGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACg > 1:1576315/1‑51 (MQ=255) aaaaCGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGc > 1:9328642/1‑51 (MQ=255) aaaaCGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGc > 1:3534378/1‑51 (MQ=255) aaaaCGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGc < 1:8045457/51‑1 (MQ=255) aaCGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCa < 1:523409/51‑1 (MQ=255) aaCGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCa > 1:6802811/1‑51 (MQ=255) aCGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAg < 1:9649511/51‑1 (MQ=255) aCGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAg < 1:2555609/51‑1 (MQ=255) cGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGa < 1:7846002/51‑1 (MQ=255) cGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGa < 1:10655703/51‑1 (MQ=255) cGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGa < 1:7907723/51‑1 (MQ=255) cGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGa > 1:3881662/1‑51 (MQ=255) cGATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGa > 1:3567074/1‑51 (MQ=255) gATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGAt > 1:6979811/1‑51 (MQ=255) gATAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGAt < 1:1252456/51‑1 (MQ=255) aTAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATc < 1:2421609/51‑1 (MQ=255) aTAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATc < 1:2425083/51‑1 (MQ=255) tAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGcc > 1:7841518/1‑45 (MQ=255) tAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGcc > 1:7827817/1‑45 (MQ=255) tAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGcc > 1:5257619/1‑45 (MQ=255) tAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGcc > 1:308391/1‑45 (MQ=255) tAAGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCg < 1:3042928/51‑1 (MQ=255) aaGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGAt < 1:3671285/48‑1 (MQ=255) aaGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGt > 1:4433558/1‑51 (MQ=255) aaGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGt < 1:8828518/51‑1 (MQ=255) aGTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGtt < 1:8134179/51‑1 (MQ=255) gTCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTtc < 1:9379790/51‑1 (MQ=255) tCTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTtct < 1:827355/51‑1 (MQ=255) ccgACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTtctc < 1:6793561/49‑1 (MQ=255) cTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTtctc < 1:4016179/51‑1 (MQ=255) cTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTtctc < 1:3961614/51‑1 (MQ=255) cTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTtctc > 1:4112814/1‑51 (MQ=255) cTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTtctc > 1:10345325/1‑51 (MQ=255) cTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTtctc < 1:3500677/51‑1 (MQ=255) cTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTtctc < 1:1241765/51‑1 (MQ=255) cTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTtctc < 1:2424745/51‑1 (MQ=255) cTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTtctc > 1:10518942/1‑51 (MQ=255) cTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTtctc < 1:8373379/51‑1 (MQ=255) cTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTtctc < 1:5094135/51‑1 (MQ=255) cTGACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTtctc < 1:2713889/51‑1 (MQ=255) gACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGa > 1:687897/1‑51 (MQ=255) gACATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGa > 1:10897590/1‑51 (MQ=255) aCATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGAt > 1:3355088/1‑51 (MQ=255) cATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATa < 1:7161495/51‑1 (MQ=255) cATAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCATTCTCGATa < 1:8253392/51‑1 (MQ=255) aTAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATAc < 1:2290975/51‑1 (MQ=255) tAAATGACCGCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATAcc > 1:5967449/1‑51 (MQ=255) aaaTGACCGCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCg > 1:5231830/1‑51 (MQ=255) tGACCGCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGaaa < 1:6425900/51‑1 (MQ=255) tGACCGCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGaaa > 1:3326762/1‑51 (MQ=255) tGACCGCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGaaa < 1:3648020/51‑1 (MQ=255) gACCGCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAac > 1:8505796/1‑51 (MQ=255) aCCGCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAacc < 1:4891673/51‑1 (MQ=255) aCCGCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAacc > 1:7852159/1‑51 (MQ=255) aCCGCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAacc < 1:9624566/51‑1 (MQ=255) aCCGCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAacc < 1:4873076/51‑1 (MQ=255) ccGCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAacca < 1:1433446/51‑1 (MQ=255) cGCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAaccac < 1:5775960/51‑1 (MQ=255) gCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGa < 1:2484331/44‑1 (MQ=255) gCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAaccacc < 1:1638036/51‑1 (MQ=255) gCTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAaccacc < 1:399706/51‑1 (MQ=255) cTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCg > 1:2298361/1‑51 (MQ=255) cTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCg < 1:8216515/51‑1 (MQ=255) cTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCg > 1:605447/1‑51 (MQ=255) cTATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCg < 1:2108748/51‑1 (MQ=255) tATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCgg > 1:5558055/1‑51 (MQ=255) tATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCgg > 1:4812400/1‑51 (MQ=255) tATGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCgg > 1:4081580/1‑51 (MQ=255) tGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTa > 1:6186337/1‑51 (MQ=255) tGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTa > 1:9107317/1‑51 (MQ=255) tGAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTa < 1:538376/51‑1 (MQ=255) gAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTAt < 1:6969407/51‑1 (MQ=255) gAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTAt < 1:9772986/51‑1 (MQ=255) gAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTAt > 1:2467155/1‑51 (MQ=255) gAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTAt > 1:10560774/1‑51 (MQ=255) gAGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTAt < 1:5459560/51‑1 (MQ=255) aGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTATg < 1:3035686/51‑1 (MQ=255) aGCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTATg > 1:8712628/1‑51 (MQ=255) gCACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTATGa > 1:9095586/1‑51 (MQ=255) cACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTATGaa < 1:8198641/51‑1 (MQ=255) cACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTATGaa > 1:7353025/1‑51 (MQ=255) cACTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTATGaa > 1:5746065/1‑51 (MQ=255) aCTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTATGAAc < 1:10680528/51‑1 (MQ=255) aCTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTATGAAc > 1:3417393/1‑51 (MQ=255) cTGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTATGAAcc < 1:637559/51‑1 (MQ=255) tGCCATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTATGAACCa < 1:3104796/51‑1 (MQ=255) | GAACTGTAAAACGATAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACCGGTATGAACCA > REL606/238954‑239049 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |