Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 2,847,052 A→G 100% V10A (GTT→GCT)  recD ← exonuclease V (RecBCD complex), alpha chain

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*REL6062,847,0520AG100.0% 486.5 / NA 126V10A (GTT→GCT) recDexonuclease V (RecBCD complex), alpha chain
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (48/78);  total (48/78)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 126 total aligned reads displayed.

GTCAGGGCAAATTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAACTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCAGGGTCA  >  REL606/2847004‑2847099
                                                |                                               
gTCAGGGCAAATTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCt                                               <  1:4121009/51‑1 (MQ=255)
gTCAGGGCAAATTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCt                                               <  1:255588/51‑1 (MQ=255)
gTCAGGGCAAATTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCt                                               >  1:8322607/1‑51 (MQ=255)
gTCAGGGCAAATTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCt                                               <  1:4327805/51‑1 (MQ=255)
 tCAGGGCAAATTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCtt                                              <  1:4204752/51‑1 (MQ=255)
  cAGGGCAAATTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTc                                             <  1:4182921/51‑1 (MQ=255)
  cAGGGCAAATTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTc                                             >  1:4959237/1‑51 (MQ=255)
   aGGGCAAATTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTcc                                            <  1:735337/51‑1 (MQ=255)
   aGGGCAAATTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTcc                                            <  1:6474344/51‑1 (MQ=255)
   aGGGCAAATTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTcc                                            >  1:7575292/1‑51 (MQ=255)
      gCAAATTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGt                                         >  1:4571438/1‑51 (MQ=255)
       cAAATTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTa                                        >  1:2897558/1‑51 (MQ=255)
       cAAATTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTa                                        >  1:10406622/1‑51 (MQ=255)
       cAAATTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTa                                        <  1:871947/51‑1 (MQ=255)
       cAAATTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTa                                        >  1:1835150/1‑51 (MQ=255)
       cAAATTGCACATCCAGCGGGCGTAGCTGGTTGTGCTCCACAGCTTCCAGTa                                        <  1:10488882/51‑1 (MQ=39)
       cAAATTACACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTa                                        >  1:3853740/1‑51 (MQ=38)
        aaaTTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTaa                                       <  1:4026120/51‑1 (MQ=255)
        aaaTTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTaa                                       >  1:8168099/1‑51 (MQ=255)
         aaTTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAAt                                      >  1:2983368/1‑51 (MQ=255)
          aTTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAAtt                                     <  1:10548660/51‑1 (MQ=255)
          aTTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAAtt                                     <  1:9747572/51‑1 (MQ=255)
           ttGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTg                                    >  1:5903680/1‑51 (MQ=255)
           ttGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTg                                    <  1:8084594/51‑1 (MQ=255)
           ttGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTg                                    <  1:2720990/51‑1 (MQ=255)
           ttGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTg                                    >  1:2802942/1‑51 (MQ=255)
            tGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGc                                   <  1:3557940/51‑1 (MQ=255)
            tGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGc                                   >  1:2304302/1‑51 (MQ=255)
            tGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGc                                   >  1:10789624/1‑51 (MQ=255)
              cacaTCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCtt                                 <  1:9818349/51‑1 (MQ=255)
              cacaTCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCtt                                 <  1:5367838/51‑1 (MQ=255)
               acaTCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCttt                                <  1:4610889/51‑1 (MQ=255)
               acaTCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCttt                                >  1:10571297/1‑51 (MQ=255)
                caTCCAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCtttt                               <  1:10895612/51‑1 (MQ=255)
                   ccAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCa                            <  1:4278283/51‑1 (MQ=255)
                   ccAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCa                            <  1:4849980/51‑1 (MQ=255)
                   ccAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCa                            <  1:3784978/51‑1 (MQ=255)
                   ccAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCa                            <  1:9441775/51‑1 (MQ=255)
                   ccAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCa                            <  1:3349795/51‑1 (MQ=255)
                    cAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCaa                           >  1:1144581/1‑51 (MQ=255)
                    cAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCaa                           <  1:6938313/51‑1 (MQ=255)
                    cAGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCaa                           <  1:6018859/51‑1 (MQ=255)
                     aGCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAAt                          >  1:6843170/1‑51 (MQ=255)
                      gCGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAAtt                         <  1:2903128/51‑1 (MQ=255)
                       cGGGTGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAAtnt                        <  1:5519930/51‑1 (MQ=255)
                       cGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAAttt                        >  1:5531511/1‑51 (MQ=255)
                       cGGGCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAAttt                        <  1:2461305/51‑1 (MQ=255)
                        gggCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTc                       >  1:8174052/1‑51 (MQ=255)
                        gggCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTc                       <  1:5072481/51‑1 (MQ=255)
                        gggCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTc                       <  1:6981817/51‑1 (MQ=255)
                        gggCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTc                       <  1:3957741/51‑1 (MQ=255)
                         ggCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCa                      <  1:9497655/51‑1 (MQ=255)
                         ggCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCa                      <  1:8353606/51‑1 (MQ=255)
                          gCGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCAt                     <  1:7630410/51‑1 (MQ=255)
                           cGTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCAtt                    <  1:2197525/51‑1 (MQ=255)
                            gTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTa                   <  1:2288348/51‑1 (MQ=255)
                            gTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTa                   <  1:10116395/51‑1 (MQ=255)
                            gTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTa                   <  1:10730559/51‑1 (MQ=255)
                            gTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTa                   <  1:3118174/51‑1 (MQ=255)
                            gTAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTa                   >  1:437375/1‑51 (MQ=255)
                             tAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTAc                  <  1:3530519/51‑1 (MQ=255)
                             tAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTAc                  <  1:3695841/51‑1 (MQ=255)
                             tAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTAc                  <  1:3557748/51‑1 (MQ=255)
                             tAGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTAc                  <  1:3261830/51‑1 (MQ=255)
                              aGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACg                 <  1:3913885/51‑1 (MQ=255)
                              aGCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACg                 <  1:256460/51‑1 (MQ=255)
                               gCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGc                >  1:10105800/1‑51 (MQ=255)
                               gCTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGc                <  1:8518000/51‑1 (MQ=255)
                                cTGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGcc               <  1:2069874/51‑1 (MQ=255)
                                 tGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGcct              >  1:2597411/1‑51 (MQ=255)
                                 tGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGcct              <  1:41446/51‑1 (MQ=255)
                                 tGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGcct              >  1:7059641/1‑51 (MQ=255)
                                 tGTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGcct              <  1:5554591/51‑1 (MQ=255)
                                  gTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGcctc             <  1:3496164/51‑1 (MQ=255)
                                  gTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGcctc             >  1:9467511/1‑51 (MQ=255)
                                  gTTTGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGcctc             <  1:4274677/51‑1 (MQ=255)
                                   tttGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGcctcc            <  1:8353509/51‑1 (MQ=255)
                                   tttGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGcctcc            <  1:2655796/51‑1 (MQ=255)
                                    ttGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGcctcct           <  1:1866622/51‑1 (MQ=255)
                                    ttGTGCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGcctcct           >  1:10183496/1‑51 (MQ=255)
                                     tgtgCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCctcctc          <  1:1249884/51‑1 (MQ=255)
                                      gtgCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCtcctcc         <  1:2627502/51‑1 (MQ=255)
                                      gtgCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCtcctcc         <  1:4694731/51‑1 (MQ=255)
                                       tgCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCa        >  1:9497252/1‑51 (MQ=255)
                                       tgCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCa        >  1:6831998/1‑51 (MQ=255)
                                        gCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCAg       >  1:8591638/1‑51 (MQ=255)
                                        gCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCAg       <  1:496227/51‑1 (MQ=255)
                                        gCTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCAg       <  1:5912837/51‑1 (MQ=255)
                                         cTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCAgg      <  1:4199296/51‑1 (MQ=255)
                                         cTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCAgg      <  1:10806350/51‑1 (MQ=255)
                                         cTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCAgg      <  1:10597814/51‑1 (MQ=255)
                                         cTCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCAgg      >  1:8752415/1‑51 (MQ=255)
                                          tCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCAggg     >  1:7030986/1‑51 (MQ=255)
                                          tCCACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCAggg     >  1:3096459/1‑51 (MQ=255)
                                           ccACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCAGGGt    >  1:9787754/1‑51 (MQ=255)
                                           ccACAGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCAGGGt    <  1:4787107/51‑1 (MQ=255)
                                            cacaGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCAGGGTc   <  1:7496518/51‑1 (MQ=255)
                                            cacaGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCAGGGTc   <  1:5249153/51‑1 (MQ=255)
                                             acaGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCAggg     >  1:8341358/1‑48 (MQ=255)
                                             acaGCTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCAGGGTCa  <  1:7404005/51‑1 (MQ=255)
                                                |                                               
GTCAGGGCAAATTGCACATCCAGCGGGCGTAGCTGTTTGTGCTCCACAACTTCCAGTAATTGCTTTTGCAATTTCATTACGCCTCCTCCAGGGTCA  >  REL606/2847004‑2847099

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: