| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | REL606 | 2,702,361 | G→A | 100% | G160S (GGC→AGC) | proX → | glycine betaine transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 2,702,361 | 0 | G | A | 100.0% | 319.4 / NA | 91 | G160S (GGC→AGC) | proX | glycine betaine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (55/36); total (55/36) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 103 total aligned reads displayed.
TTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGAA > REL606/2702313‑2702408 | ttCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCctagc > 1:8544721/1‑51 (MQ=255)ttCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCctagc > 1:1565487/1‑51 (MQ=255)ttCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCctagc > 1:10596155/1‑51 (MQ=255) tCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCctagct > 1:141222/1‑51 (MQ=255) tCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCctagct < 1:4483209/51‑1 (MQ=255) tCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCctagct < 1:5628831/51‑1 (MQ=255) cGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCctagctg < 1:3572080/51‑1 (MQ=255) cGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCctagctg > 1:9773383/1‑51 (MQ=255) cGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCctagctg > 1:9434266/1‑51 (MQ=255) gATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCctagctgg > 1:9723349/1‑51 (MQ=255) gATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCctagctgg > 1:2129615/1‑51 (MQ=255) gATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCctagctgg < 1:1467770/51‑1 (MQ=255) aTACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTggg > 1:1840311/1‑51 (MQ=255) aTACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTggg < 1:618002/51‑1 (MQ=255) aTACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTggg > 1:720102/1‑51 (MQ=255) aTACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTggg < 1:5309670/51‑1 (MQ=255) tACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTgggg < 1:3794199/51‑1 (MQ=255) aCCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGc > 1:3308946/1‑51 (MQ=255) aCCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGc < 1:7385987/51‑1 (MQ=255) aCCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGc > 1:6126261/1‑51 (MQ=255) aCCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGc > 1:2853894/1‑51 (MQ=255) ccAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCt < 1:7603666/51‑1 (MQ=255) ccAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCt > 1:4509188/1‑51 (MQ=255) ccAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCt > 1:7680262/1‑51 (MQ=255) cAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTg > 1:4255741/1‑51 (MQ=255) cAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTg < 1:1435673/51‑1 (MQ=255) aaCGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGc > 1:400026/1‑51 (MQ=255) aaCGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGc > 1:7818777/1‑51 (MQ=255) aaCGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGc < 1:2339147/51‑1 (MQ=255) aaCGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGc > 1:830728/1‑51 (MQ=255) aaCGGCGACGGAAAAGCGGATTTAACCGGTTGAAACCCTAGCTGGGGCTGc > 1:467255/1‑51 (MQ=255) cGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGa > 1:5840419/1‑51 (MQ=255) ggCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGaa < 1:3710394/51‑1 (MQ=255) ggCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGaa > 1:10127740/1‑51 (MQ=255) ggCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGaa < 1:3722601/51‑1 (MQ=255) cGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGaa < 1:5245832/49‑1 (MQ=255) cGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAgg > 1:2211946/1‑51 (MQ=255) cGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAgg > 1:3018984/1‑51 (MQ=255) cGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAgg > 1:9625566/1‑51 (MQ=255) cGACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAgg > 1:9626968/1‑51 (MQ=255) gACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGt > 1:5563537/1‑51 (MQ=255) gACGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGt > 1:2623901/1‑51 (MQ=255) aCGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTg > 1:5625595/1‑51 (MQ=255) cGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGc < 1:9746176/51‑1 (MQ=255) cGGAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGc > 1:7751163/1‑51 (MQ=255) ggAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCg > 1:7886277/1‑51 (MQ=255) ggAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCg > 1:8864644/1‑51 (MQ=255) ggAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCg > 1:5365947/1‑51 (MQ=255) ggAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCg < 1:1366554/51‑1 (MQ=255) ggAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCg > 1:10807013/1‑51 (MQ=255) gAAAAGCGGATTTAGCCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGa > 1:9164477/1‑51 (MQ=255) gAAAAGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGa < 1:1996398/51‑1 (MQ=255) aaaaGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGAt > 1:6461142/1‑51 (MQ=255) aaaGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATc < 1:1278487/51‑1 (MQ=255) aaGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCa > 1:5887198/1‑51 (MQ=255) aaGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCa < 1:2688134/51‑1 (MQ=255) aGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCaa < 1:4029554/51‑1 (MQ=255) aGCGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCaa < 1:438685/51‑1 (MQ=255) cGGATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAacc < 1:3929343/51‑1 (MQ=255) ggATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAacca < 1:10026808/51‑1 (MQ=255) ggATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAacca > 1:549033/1‑51 (MQ=255) ggATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAacca > 1:8295300/1‑51 (MQ=255) ggATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAacca > 1:2085155/1‑51 (MQ=255) ggATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAacca < 1:2665324/51‑1 (MQ=255) gATTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAaccac > 1:6304787/1‑51 (MQ=255) aTTTAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAaccacc > 1:659688/1‑51 (MQ=255) ttAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAg > 1:44599/1‑51 (MQ=255) ttAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAg < 1:134058/51‑1 (MQ=255) tAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGc < 1:8696588/51‑1 (MQ=255) tAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGc < 1:8514236/51‑1 (MQ=255) tAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGc < 1:2009366/51‑1 (MQ=255) tAACCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGc > 1:7480058/1‑51 (MQ=255) tAACCGGTTGTAACCCTAGCTGGGGCTACGAAGGTGCGATCAACCACCAGc > 1:1699458/1‑51 (MQ=255) aCCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCtt < 1:597098/51‑1 (MQ=255) aCCGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCtt > 1:8562927/1‑51 (MQ=255) ccGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTg > 1:5619450/1‑51 (MQ=255) cGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTg < 1:2604829/50‑1 (MQ=255) cGGTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGc > 1:9905120/1‑51 (MQ=255) ggTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGcc > 1:3539251/1‑51 (MQ=255) gTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCcg > 1:7214913/1‑51 (MQ=255) gTTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCcg < 1:5864396/51‑1 (MQ=255) gNTGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCcg > 1:3246030/1‑51 (MQ=255) tGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAATCACCAGCTTGCcgcg > 1:2970566/1‑51 (MQ=38) tGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCcgcg < 1:2839571/51‑1 (MQ=255) tGTAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCcgcg < 1:4601253/51‑1 (MQ=255) tAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTa > 1:4898305/1‑51 (MQ=255) tAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTa > 1:5143148/1‑51 (MQ=255) tAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTa < 1:7752093/51‑1 (MQ=255) tAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTa > 1:2977099/1‑51 (MQ=255) tAACCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTa < 1:6013429/51‑1 (MQ=255) aaCCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTAt > 1:7427280/1‑51 (MQ=255) aaCCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTAt < 1:4259094/51‑1 (MQ=255) aaCCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTAt > 1:3879879/1‑51 (MQ=255) aaCCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTAt < 1:1427073/51‑1 (MQ=255) aaCCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTAt < 1:1345725/51‑1 (MQ=255) aCCCTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATg > 1:6687884/1‑51 (MQ=255) cccTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGa < 1:7648911/51‑1 (MQ=255) cccTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGa > 1:136242/1‑51 (MQ=255) ccTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGaa > 1:937200/1‑51 (MQ=255) ccTAGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGaa > 1:9661045/1‑51 (MQ=255) | TTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGAA > REL606/2702313‑2702408 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |