| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | REL606 | 2,268,951 | T→G | 100% | I129S (ATC→AGC) | atoC → | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 2,268,951 | 0 | T | G | 100.0% | 384.5 / NA | 100 | I129S (ATC→AGC) | atoC | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (58/42); total (58/42) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 106 total aligned reads displayed.
TTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGATCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACA > REL606/2268904‑2268998 | tttAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCg > 1:9133246/1‑51 (MQ=255) ttAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGt > 1:10480068/1‑51 (MQ=255) ttAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGt < 1:9303345/51‑1 (MQ=255) tAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTc > 1:9504132/1‑51 (MQ=255) tAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTc < 1:2595714/51‑1 (MQ=255) tAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTc < 1:5667755/51‑1 (MQ=255) tAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTc < 1:6035263/51‑1 (MQ=255) tAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTc < 1:1294/51‑1 (MQ=255) aaTCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCa < 1:478226/51‑1 (MQ=255) aaTCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCa > 1:5220150/1‑51 (MQ=255) aaTCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCa < 1:6581955/51‑1 (MQ=255) aaTCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCa < 1:3289062/51‑1 (MQ=255) aaTCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCa > 1:7734355/1‑51 (MQ=255) tCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATc < 1:6988799/51‑1 (MQ=255) tCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATc < 1:1089639/51‑1 (MQ=255) tCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATc < 1:8121281/51‑1 (MQ=255) tCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATc > 1:8864471/1‑51 (MQ=255) cGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCt > 1:7725502/1‑51 (MQ=255) cGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCt < 1:1521603/51‑1 (MQ=255) cGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCt < 1:5945129/51‑1 (MQ=255) cGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCt > 1:10701097/1‑51 (MQ=255) gTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTg > 1:2099986/1‑51 (MQ=255) gTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTg > 1:5785031/1‑51 (MQ=255) ttCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGc > 1:6087213/1‑51 (MQ=255) ttCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGc > 1:4008178/1‑51 (MQ=255) tCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCa > 1:4461191/1‑51 (MQ=255) tCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCa > 1:8655003/1‑51 (MQ=255) tCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCa < 1:6399602/51‑1 (MQ=255) cAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCAc > 1:3979151/1‑51 (MQ=255) aGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCAcc < 1:5412985/51‑1 (MQ=255) gcgcgcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCa < 1:6378189/51‑1 (MQ=255) cgcgcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAg < 1:9687366/51‑1 (MQ=255) cgcgcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAg < 1:8083202/51‑1 (MQ=255) cgcgcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAg > 1:3659574/1‑51 (MQ=255) cgcgcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAg < 1:1244452/51‑1 (MQ=255) gcgcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAgg > 1:2865077/1‑51 (MQ=255) gcgcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAgg < 1:8963835/51‑1 (MQ=255) gcgcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAgg > 1:1636164/1‑51 (MQ=255) gcgcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAgg > 1:5601741/1‑51 (MQ=255) gcgcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAgg < 1:8069970/51‑1 (MQ=255) cgcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGc < 1:8568864/51‑1 (MQ=255) cgcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGc < 1:7739203/51‑1 (MQ=255) cgcTTTACAACTCCAGTCAAAGAAAAAAGAGAGCCGTCATCTGCACCAGGc < 1:8580669/51‑1 (MQ=255) gcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCa > 1:10313038/1‑51 (MQ=255) gcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCa > 1:4035737/1‑51 (MQ=255) gcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCa > 1:3399450/1‑51 (MQ=255) gcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCa > 1:5265597/1‑51 (MQ=255) tttACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAgg < 1:8145190/47‑1 (MQ=255) tttACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACt > 1:3672650/1‑51 (MQ=255) tttACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACt > 1:1506062/1‑51 (MQ=255) tttACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACt > 1:8355723/1‑51 (MQ=255) tttACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACt < 1:4231741/51‑1 (MQ=255) ttACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTg > 1:10338803/1‑51 (MQ=255) ttACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTg > 1:65478/1‑51 (MQ=255) ttACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTg < 1:4224723/51‑1 (MQ=255) ttACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTg < 1:7276265/51‑1 (MQ=255) tACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGa > 1:131221/1‑51 (MQ=255) tACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGa < 1:1995031/51‑1 (MQ=255) tACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGa < 1:5226810/51‑1 (MQ=255) aCAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAg < 1:2577701/51‑1 (MQ=255) cAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGc > 1:8144492/1‑51 (MQ=255) aaCTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGc > 1:9103189/1‑50 (MQ=255) aaCTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCa > 1:9201813/1‑51 (MQ=255) cTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCAcc > 1:364555/1‑51 (MQ=255) cTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCAcc > 1:4181563/1‑51 (MQ=255) tCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGc < 1:9229491/47‑1 (MQ=255) tCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCa < 1:10462610/51‑1 (MQ=255) tCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCa > 1:7134091/1‑51 (MQ=255) ccAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAg < 1:9356382/51‑1 (MQ=255) ccAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAg > 1:6468835/1‑51 (MQ=255) aGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCt < 1:7307396/51‑1 (MQ=255) aGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCt > 1:9681530/1‑51 (MQ=255) gTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTg > 1:9085667/1‑51 (MQ=255) tCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTgg > 1:9069058/1‑51 (MQ=255) cAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGc > 1:5939573/1‑51 (MQ=255) cAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGc > 1:1607552/1‑51 (MQ=255) aaTGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCa > 1:1568554/1‑51 (MQ=255) aTGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCaa < 1:3414303/51‑1 (MQ=255) aTGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCa > 1:6472319/1‑50 (MQ=255) tGAAAAAAGAGAGCCGTCATCTGCACCCGGCACTGAGCACCAGCTGGCAAt > 1:4298355/1‑51 (MQ=255) tGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAAt > 1:8452464/1‑51 (MQ=255) tGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAAt > 1:4045934/1‑51 (MQ=255) tGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAAt > 1:8999217/1‑51 (MQ=255) aaaaaaGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATgg > 1:4303236/1‑51 (MQ=255) aaaaaaGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATgg < 1:7352552/51‑1 (MQ=255) aaaaaGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATggg > 1:9237933/1‑51 (MQ=255) aaaaaGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATggg > 1:559969/1‑51 (MQ=255) aaaaaGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATggg < 1:10481020/51‑1 (MQ=255) aaaaGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATgggg > 1:4702143/1‑51 (MQ=255) aaaaGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATgggg > 1:4461163/1‑51 (MQ=255) aaaGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATggggg > 1:1566791/1‑51 (MQ=255) aaaGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATggggg < 1:4898926/51‑1 (MQ=255) aaaGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCGGGCAATggggg > 1:311685/1‑51 (MQ=255) aaGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGc > 1:10486782/1‑51 (MQ=255) agagagCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGca > 1:5710889/1‑51 (MQ=255) agagagCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGca > 1:4915317/1‑51 (MQ=255) gagaGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGcac > 1:9546959/1‑51 (MQ=255) agagCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGcaca > 1:7097758/1‑51 (MQ=255) agagCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGcaca > 1:526845/1‑51 (MQ=255) agagCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGcaca > 1:1884037/1‑51 (MQ=255) | TTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGATCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACA > REL606/2268904‑2268998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |