Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,930,575 | C→A | 100% | F137L (TTC→TTA) | yecE → | hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 1,930,575 | 0 | C | A | 99.1% | 401.2 / ‑3.3 | 114 | F137L (TTC→TTA) | yecE | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (1/0); new base A (66/47); total (67/47) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.88e-01 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 114 total aligned reads displayed.
TCCTGGCGAATTTAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTCGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTACATCAGCG > REL606/1930527‑1930622 | tCCTGGCGAATTTAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGc > 1:9302527/1‑51 (MQ=255) ccTGGCGAATTTAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGcc > 1:4324745/1‑51 (MQ=255) cTGGCGAATTTAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCa > 1:1209434/1‑51 (MQ=255) cTGGCGAATTTAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCa > 1:5163907/1‑51 (MQ=255) cTGGCGAATTTAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCa > 1:948318/1‑51 (MQ=255) cTGGCGAATTTAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCa > 1:1624878/1‑51 (MQ=255) tGGCGAATTTAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCaa > 1:3779657/1‑51 (MQ=255) tGGCGAATTTAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCaa > 1:10535505/1‑51 (MQ=255) tGGCGAATTTAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCaa > 1:3548508/1‑51 (MQ=255) ggCGAATTTAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCaaa < 1:3104070/51‑1 (MQ=255) gCGAATTTAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAg > 1:1140822/1‑51 (MQ=255) gAATTTAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGga > 1:8885184/1‑51 (MQ=255) gAATTTAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGga > 1:7269467/1‑51 (MQ=255) aaTTTAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGgag > 1:9098950/1‑51 (MQ=255) aTTTAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGgaga > 1:6674697/1‑51 (MQ=255) tttAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGagaa > 1:7726669/1‑51 (MQ=255) ttAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGagaag > 1:9308367/1‑51 (MQ=255) ttAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGagaag > 1:1530922/1‑51 (MQ=255) ttAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGagaag > 1:10282327/1‑51 (MQ=255) ttAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGagaag > 1:2437537/1‑51 (MQ=255) tAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGagaaga > 1:2163154/1‑51 (MQ=255) aaTTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAagag > 1:9274833/1‑51 (MQ=255) aaTTATGGCGTGGAAGCCCGCCATCCACAGTTTTTAGCCAAAGGAGAagag < 1:7994386/51‑1 (MQ=255) aTTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAgg > 1:845737/1‑51 (MQ=255) aTTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAgg > 1:2110292/1‑51 (MQ=255) aTTATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAgg > 1:3766675/1‑51 (MQ=255) ttATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGa > 1:10416645/1‑51 (MQ=255) ttATGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGa > 1:6612600/1‑51 (MQ=255) aTGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAAc > 1:1098971/1‑51 (MQ=255) aTGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAAc > 1:5311852/1‑51 (MQ=255) tGGCGTGGAAGTCCGCCATCCACAGTTTTTCGCCAAAGGAGAAGAGGAACa > 1:4654521/1‑51 (MQ=255) tGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACa > 1:3424478/1‑51 (MQ=255) tGGCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACa < 1:5303097/51‑1 (MQ=255) ggCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAagag < 1:840708/45‑1 (MQ=255) ggCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACaa > 1:3139777/1‑51 (MQ=255) ggCGGGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACaa < 1:4512715/51‑1 (MQ=255) gCGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACaaa > 1:1933207/1‑51 (MQ=255) cGTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAAc > 1:3180518/1‑51 (MQ=255) cGTGGAAGCCCGCCATCCACAGTTTTTAGCCAAAGGagaa < 1:6094642/40‑1 (MQ=38) gTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAAc < 1:1057190/50‑1 (MQ=255) gTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACg > 1:1649530/1‑51 (MQ=255) gTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACg > 1:88126/1‑51 (MQ=255) gTGGAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACg > 1:9344296/1‑51 (MQ=255) ggAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCt > 1:3750777/1‑51 (MQ=255) ggAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCt < 1:5296738/51‑1 (MQ=255) ggAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCt < 1:10411402/51‑1 (MQ=255) ggAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCt < 1:10086200/51‑1 (MQ=255) gAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCtt > 1:8622124/1‑51 (MQ=255) gAAGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCtt > 1:10458002/1‑51 (MQ=255) aaGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTa > 1:5646000/1‑51 (MQ=255) aaGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTa < 1:1792728/51‑1 (MQ=255) aaGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTa > 1:1210196/1‑51 (MQ=255) aaGCCCGCCATCCACAGTTTTTAGCCAAAGgag < 1:826088/33‑1 (MQ=37) aGTCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTaa < 1:5039295/51‑1 (MQ=255) aGTCCGCCATCCACAGATTTTAGCCAAAGGAGAAGAGGAACAAACGCTTaa > 1:1501979/1‑51 (MQ=255) tCCGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATc > 1:7174632/1‑51 (MQ=255) cccccATCCACAGTTTTTAGCCAAAGGAGAAGAGGaa < 1:5396703/34‑1 (MQ=37) ccGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACa < 1:1256110/39‑1 (MQ=39) ccGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAAc < 1:692103/42‑1 (MQ=255) ccGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACg < 1:1054766/43‑1 (MQ=255) ccGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGc < 1:17570/44‑1 (MQ=255) ccGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTaa < 1:2162602/48‑1 (MQ=255) ccGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAAt < 1:6887680/49‑1 (MQ=255) ccGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATcg > 1:9556811/1‑51 (MQ=255) ccGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATcg < 1:10882019/51‑1 (MQ=255) ccGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATcg < 1:2268880/51‑1 (MQ=255) ccGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATc < 1:7145365/50‑1 (MQ=255) ccGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATc < 1:2076660/50‑1 (MQ=255) cGCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATcgc > 1:53958/1‑51 (MQ=255) gCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATcgcg > 1:865060/1‑51 (MQ=255) gCCATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATcgcg > 1:3578690/1‑51 (MQ=255) ccATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACa < 1:5783322/36‑1 (MQ=255) ccATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATcgcg < 1:7530685/50‑1 (MQ=255) cATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACaa < 1:7398749/36‑1 (MQ=255) cATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACa < 1:4091962/35‑1 (MQ=255) cATCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGt > 1:5711310/1‑51 (MQ=255) aTCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTa < 1:7528174/42‑1 (MQ=255) tCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGttt < 1:4083396/51‑1 (MQ=255) tCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGttt < 1:434666/51‑1 (MQ=255) tCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGttt > 1:2381290/1‑51 (MQ=255) tCCACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGttt > 1:2455657/1‑51 (MQ=255) ccACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTa < 1:5057520/51‑1 (MQ=255) ccACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTa < 1:9559860/51‑1 (MQ=255) ccACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTa < 1:2879794/51‑1 (MQ=255) ccACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTa > 1:1330540/1‑51 (MQ=255) ccACAGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTa < 1:5740563/51‑1 (MQ=255) cacaGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTAc < 1:1472190/51‑1 (MQ=255) acaGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTACa > 1:1948013/1‑51 (MQ=255) caGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTACAt > 1:7283157/1‑51 (MQ=255) caGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTACAt < 1:5926830/51‑1 (MQ=255) caGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTACAt < 1:7913308/51‑1 (MQ=255) caGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTACAt > 1:3629890/1‑51 (MQ=255) aGTTTTTAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTACATc < 1:8108839/51‑1 (MQ=255) ttttAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTACATCAgc > 1:6548656/1‑51 (MQ=255) ttttAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTACATCAgc > 1:6584832/1‑51 (MQ=255) ttttAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTACATCAgc > 1:8690607/1‑51 (MQ=255) tttAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTACATCAgcg > 1:5767284/1‑51 (MQ=255) tttAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTACATCAgcg > 1:726384/1‑51 (MQ=255) tttAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTACATCAgcg > 1:4669892/1‑51 (MQ=255) tttAGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTACATCAgcg > 1:89750/1‑51 (MQ=255) | TCCTGGCGAATTTAATTATGGCGTGGAAGTCCGCCATCCACAGTTTTTCGCCAAAGGAGAAGAGGAACAAACGCTTAATCGCGGTTTACATCAGCG > REL606/1930527‑1930622 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |