| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | REL606 | 1,746,189 | G→A | 100% | intergenic (‑237/‑152) | ydiJ ← / → ydiK | predicted FAD‑linked oxidoreductase/predicted inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,746,189 | 0 | G | A | 100.0% | 390.1 / NA | 110 | intergenic (‑237/‑152) | ydiJ/ydiK | predicted FAD‑linked oxidoreductase/predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (55/55); total (55/55) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 117 total aligned reads displayed.
ATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTGTTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAA > REL606/1746141‑1746236 | aTGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAgttatt < 1:2922186/51‑1 (MQ=255)aTGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAgttatt < 1:361877/51‑1 (MQ=255) gCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGttattg < 1:6254597/50‑1 (MQ=255) cAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTa < 1:2145555/51‑1 (MQ=255) aaCTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTAc > 1:9413708/1‑51 (MQ=255) aaCTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTAc > 1:10150563/1‑51 (MQ=255) aaCTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTAc > 1:1156474/1‑51 (MQ=255) aaCTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTAc < 1:10441392/51‑1 (MQ=255) aaCTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTAc < 1:8099034/51‑1 (MQ=255) aCTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTAcc < 1:7329440/51‑1 (MQ=255) ttGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACcac > 1:8586133/1‑51 (MQ=255) tGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACcaca > 1:5399357/1‑51 (MQ=255) tGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACcaca > 1:4888247/1‑51 (MQ=255) tGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACcaca > 1:8185819/1‑51 (MQ=255) gAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAt > 1:4829915/1‑51 (MQ=255) gAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAt < 1:234694/51‑1 (MQ=255) gAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAt > 1:644482/1‑51 (MQ=255) aaaTACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAtt < 1:6208476/51‑1 (MQ=255) aaaTACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAtt > 1:9138704/1‑51 (MQ=255) aaaTACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAtt < 1:7705898/51‑1 (MQ=255) aaTACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAttt < 1:1785488/51‑1 (MQ=255) aaTACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAttt < 1:8149287/51‑1 (MQ=255) aTACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAtttt < 1:505745/51‑1 (MQ=255) tACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAttttt < 1:155440/51‑1 (MQ=255) tACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAttttt < 1:6843358/51‑1 (MQ=255) acgacgAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAtttttt > 1:9640906/1‑51 (MQ=255) acgacgAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAtttttt > 1:5043327/1‑51 (MQ=255) acgacgAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAtttttt > 1:4152668/1‑51 (MQ=255) cgacgaGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAttttttt > 1:3998687/1‑51 (MQ=255) cgacgaGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAttttttt < 1:1111044/51‑1 (MQ=255) cgacgaGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAttttttt < 1:5290519/51‑1 (MQ=255) cgacgaGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAttttttt > 1:2965750/1‑51 (MQ=255) gacgaGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTc > 1:6686793/1‑51 (MQ=255) gacgaGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTc < 1:3216099/51‑1 (MQ=255) gacgaGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTc > 1:8390873/1‑51 (MQ=255) gacgaGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTc > 1:81268/1‑51 (MQ=255) gacgaGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTc > 1:7141676/1‑51 (MQ=255) acgaGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCt > 1:2182164/1‑51 (MQ=255) cgaGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTa < 1:6016787/51‑1 (MQ=255) gaGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTaa < 1:6755407/51‑1 (MQ=255) gaGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTaa < 1:379515/51‑1 (MQ=255) gaGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTaa > 1:4408772/1‑51 (MQ=255) gaGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTaa < 1:10393556/51‑1 (MQ=255) gaGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTaa < 1:10147012/51‑1 (MQ=255) aGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAac < 1:10521253/51‑1 (MQ=255) aGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAac > 1:10001609/1‑51 (MQ=255) tAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAacac < 1:5244559/51‑1 (MQ=255) tAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAacac < 1:6624596/51‑1 (MQ=255) tAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAacac < 1:5281673/51‑1 (MQ=255) aaaTCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTa > 1:5907417/1‑46 (MQ=255) aaaTCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACg < 1:8656078/51‑1 (MQ=255) aaaTCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACg < 1:5502868/51‑1 (MQ=255) aTCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGcc > 1:7299583/1‑51 (MQ=255) tCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGccc > 1:9504425/1‑51 (MQ=255) cGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCa > 1:507478/1‑51 (MQ=255) cGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCa > 1:8833752/1‑51 (MQ=255) cGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCa > 1:4710949/1‑51 (MQ=255) gTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCAt < 1:7119380/51‑1 (MQ=255) gTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCAt > 1:2499946/1‑51 (MQ=255) tttGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATc > 1:1434284/1‑51 (MQ=255) tttGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATc > 1:6509770/1‑51 (MQ=255) tttGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATc > 1:8698081/1‑51 (MQ=255) tttGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATc > 1:19734/1‑51 (MQ=255) ttGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCa < 1:2808266/51‑1 (MQ=255) ttGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCa > 1:179921/1‑51 (MQ=255) ttGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCa > 1:4571923/1‑51 (MQ=255) ttGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCa > 1:8079578/1‑51 (MQ=255) ttGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCa < 1:6531703/51‑1 (MQ=255) tGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAg < 1:8296009/51‑1 (MQ=255) tGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAg > 1:403529/1‑51 (MQ=255) tGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAg < 1:2496838/51‑1 (MQ=255) tGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAg > 1:2288640/1‑51 (MQ=255) tGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAg < 1:2367971/51‑1 (MQ=255) gCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGa < 1:1238726/51‑1 (MQ=255) gCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGa < 1:1389530/51‑1 (MQ=255) cGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGaa > 1:3053201/1‑51 (MQ=255) tgtTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAAtt < 1:5566709/51‑1 (MQ=255) gtTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAAtt < 1:8866455/50‑1 (MQ=255) gtTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTa > 1:1201938/1‑51 (MQ=255) ttGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTaa < 1:9127974/51‑1 (MQ=255) tGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAg > 1:5790058/1‑51 (MQ=255) tGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAg < 1:3579025/51‑1 (MQ=255) tGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAg > 1:10172489/1‑51 (MQ=255) gCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAgg < 1:2482857/51‑1 (MQ=255) ccTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAggg > 1:10711717/1‑51 (MQ=255) cTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTa < 1:9790523/46‑1 (MQ=255) cTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGc < 1:4783673/51‑1 (MQ=255) cTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGc < 1:6318387/51‑1 (MQ=255) tGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCa > 1:8776829/1‑51 (MQ=255) tGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCa < 1:10242053/51‑1 (MQ=255) tGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCa > 1:5793422/1‑51 (MQ=255) tGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCa < 1:8995159/51‑1 (MQ=255) tGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCa > 1:10026243/1‑51 (MQ=255) tGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCa < 1:9138397/51‑1 (MQ=255) tGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCa < 1:6579789/51‑1 (MQ=255) gAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAg > 1:4061176/1‑51 (MQ=255) gAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAg < 1:9790255/51‑1 (MQ=255) aGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGa > 1:10476811/1‑51 (MQ=255) gttattGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGaa > 1:6071844/1‑51 (MQ=255) gttattGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGaa > 1:6154157/1‑51 (MQ=255) | ATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTGTTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAA > REL606/1746141‑1746236 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |