Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,343,489 | G→A | 100% | L542L (CTG→TTG) | yciR ← | modulator of Rnase II stability |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 1,343,489 | 0 | G | A | 100.0% | 293.8 / NA | 84 | L542L (CTG→TTG) | yciR | modulator of Rnase II stability |
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (57/27); total (57/27) | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
GTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAGTTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAG > REL606/1343441‑1343536 | gTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAAtt > 1:6099498/1‑51 (MQ=255) gTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAAtt < 1:298595/51‑1 (MQ=255) tACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATtc > 1:816375/1‑51 (MQ=255) cTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATtcat < 1:566467/51‑1 (MQ=255) cTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATtcat < 1:1246653/51‑1 (MQ=255) ttGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATtcatc > 1:3333789/1‑51 (MQ=255) ttGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATtcatc > 1:5459221/1‑51 (MQ=255) gcgcACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTcatcat > 1:7339598/1‑51 (MQ=255) cgcACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCAtt > 1:10356241/1‑51 (MQ=255) cgcACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCAtt < 1:10223090/51‑1 (MQ=255) cgcACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCAtt > 1:9608764/1‑51 (MQ=255) gcACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATtc > 1:2807764/1‑51 (MQ=255) cACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATtct > 1:977417/1‑51 (MQ=255) cACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATtct > 1:10525922/1‑51 (MQ=255) cACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATtct > 1:7387707/1‑51 (MQ=255) aCCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATtctc < 1:8932162/51‑1 (MQ=255) cTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCaa < 1:7097184/51‑1 (MQ=255) tAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAAt < 1:7277337/51‑1 (MQ=255) tAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAAt > 1:10237204/1‑51 (MQ=255) aGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATc < 1:5179705/51‑1 (MQ=255) gTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCa > 1:2901511/1‑51 (MQ=255) ttGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAg > 1:1101751/1‑51 (MQ=255) ttGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAg > 1:3832978/1‑51 (MQ=255) ttGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAg > 1:2278509/1‑51 (MQ=255) ttGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAg < 1:2471151/51‑1 (MQ=255) tGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGa < 1:1893498/51‑1 (MQ=255) tGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGa > 1:3399596/1‑51 (MQ=255) ggCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGAc > 1:1726300/1‑51 (MQ=255) ggCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGAc > 1:5834375/1‑51 (MQ=255) ggCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGAc > 1:7945532/1‑51 (MQ=255) gCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACa > 1:5773101/1‑51 (MQ=255) gCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACa > 1:9704169/1‑51 (MQ=255) cTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACaa < 1:7209160/51‑1 (MQ=255) tAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAAc > 1:5858558/1‑51 (MQ=255) tAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAAc > 1:1970292/1‑51 (MQ=255) tAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAAc > 1:365097/1‑51 (MQ=255) aaaTTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAAct > 1:4293192/1‑51 (MQ=255) aaTTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAActc > 1:3674820/1‑51 (MQ=255) aaTTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAActc > 1:7101348/1‑51 (MQ=255) aTTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAActct > 1:7322009/1‑51 (MQ=255) ttgttgAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAActctc > 1:1741145/1‑51 (MQ=255) ttgttgAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAActctc > 1:7399389/1‑51 (MQ=255) tgttgAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAActctct > 1:646235/1‑51 (MQ=255) tgttgAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAActctct > 1:6996506/1‑51 (MQ=255) tgttgAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAActctct < 1:5451431/51‑1 (MQ=255) gttgAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTg > 1:2356615/1‑51 (MQ=255) ttgAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGt > 1:6669949/1‑51 (MQ=255) ttgAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGt > 1:2516666/1‑51 (MQ=255) gAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCa < 1:1613410/51‑1 (MQ=255) aaTAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAg > 1:9718752/1‑51 (MQ=255) aaTAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAg < 1:778059/51‑1 (MQ=255) aTAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGt > 1:8042725/1‑51 (MQ=255) aTAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGt > 1:5694510/1‑51 (MQ=255) tAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGtt < 1:4479308/51‑1 (MQ=255) tAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGtt > 1:3535939/1‑51 (MQ=255) tAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGtt > 1:7352033/1‑51 (MQ=255) aaCAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTc > 1:7370879/1‑51 (MQ=255) aaCAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTc > 1:7528928/1‑51 (MQ=255) aaCAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTc > 1:2475406/1‑51 (MQ=255) acagacagTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCa > 1:7512292/1‑51 (MQ=255) acagacagTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCa < 1:1097176/51‑1 (MQ=255) cagacagTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCaa > 1:5235104/1‑51 (MQ=255) cagacagTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCaa < 1:3369553/51‑1 (MQ=255) cagacagTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCaa > 1:6715717/1‑51 (MQ=255) atacagTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAAc > 1:6193557/3‑51 (MQ=255) agacagTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAAc < 1:6053854/51‑1 (MQ=255) agacagTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAAc > 1:10208578/1‑51 (MQ=255) gacagTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACa < 1:9093116/51‑1 (MQ=255) gacagTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACa > 1:1152376/1‑51 (MQ=255) gacagTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACa < 1:4908665/51‑1 (MQ=255) acagTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACAt < 1:202247/51‑1 (MQ=255) cagTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATc > 1:7470621/1‑51 (MQ=255) cagTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATc < 1:274795/51‑1 (MQ=255) cagTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATc > 1:3949516/1‑51 (MQ=255) agTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCt > 1:2414082/1‑51 (MQ=255) agTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCt > 1:3111906/1‑51 (MQ=255) gTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCta > 1:6350244/1‑51 (MQ=255) gCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCtata < 1:4183731/51‑1 (MQ=255) gCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCtata > 1:5367363/1‑51 (MQ=255) gCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCtata < 1:7369071/51‑1 (MQ=255) gCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCtata < 1:10599705/51‑1 (MQ=255) ccAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCtata < 1:1467714/50‑1 (MQ=255) ccAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATNg < 1:2551834/51‑1 (MQ=255) ccAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAg > 1:3079271/1‑51 (MQ=255) | GTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAGTTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAG > REL606/1343441‑1343536 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |