| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | REL606 | 1,166,129 | T→C | 100% | intergenic (+156/‑55) | fabG → / → acpP | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase/acyl carrier protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,166,129 | 0 | T | C | 100.0% | 376.9 / NA | 98 | intergenic (+156/‑55) | fabG/acpP | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase/acyl carrier protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (57/41); total (57/41) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
AAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATTTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATT > REL606/1166081‑1166176 | aaaaTCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACAtctt < 1:7335820/51‑1 (MQ=255)aaaaTCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACAtctt > 1:7387723/1‑51 (MQ=255) aaaTCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTta < 1:14372/51‑1 (MQ=255) aaaTCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTta < 1:6495121/51‑1 (MQ=255) aTCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTtata > 1:8167462/1‑51 (MQ=255) aTCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTtata > 1:7756550/1‑51 (MQ=255) tCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATac > 1:5489268/1‑51 (MQ=255) cGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATaca > 1:9903784/1‑51 (MQ=255) cGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATaca > 1:571296/1‑51 (MQ=255) tGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACt < 1:5232459/51‑1 (MQ=255) tGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACt > 1:8685485/1‑51 (MQ=255) tGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACt > 1:6969283/1‑51 (MQ=255) ggTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTa < 1:2012158/51‑1 (MQ=255) gTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTAc < 1:4576976/51‑1 (MQ=255) gTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTAc < 1:1002410/51‑1 (MQ=255) gTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTAc < 1:9016119/51‑1 (MQ=255) tAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACg < 1:4495637/51‑1 (MQ=255) tAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACg < 1:3424691/51‑1 (MQ=255) aaGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGa > 1:6359545/1‑51 (MQ=255) aaGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGa > 1:3721012/1‑51 (MQ=255) aaGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGa > 1:9183282/1‑51 (MQ=255) aaGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGa > 1:8847042/1‑51 (MQ=255) aGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGaa < 1:3106773/51‑1 (MQ=255) aGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGaa < 1:8652048/51‑1 (MQ=255) gACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGaaa < 1:179379/51‑1 (MQ=255) aCCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGaaaa < 1:116528/51‑1 (MQ=255) ccTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAAc > 1:8377197/1‑51 (MQ=255) ccTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAAc < 1:4503122/51‑1 (MQ=255) ccTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAAc < 1:273911/51‑1 (MQ=255) ccTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAAc > 1:3916870/1‑51 (MQ=255) cTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAAcc < 1:730219/51‑1 (MQ=255) cTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAAcc > 1:5131125/1‑51 (MQ=255) tGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCa > 1:10164836/1‑51 (MQ=255) tGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCa > 1:9682167/1‑51 (MQ=255) gCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCAt < 1:2101739/51‑1 (MQ=255) gCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCAt > 1:5660610/1‑51 (MQ=255) gCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCAt < 1:10915708/51‑1 (MQ=255) ccGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATc < 1:5206738/51‑1 (MQ=255) ccGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATc > 1:7014245/1‑51 (MQ=255) ccGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATc > 1:9284819/1‑51 (MQ=255) ccGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATc < 1:6955642/51‑1 (MQ=255) cGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATcg < 1:3776243/51‑1 (MQ=255) cGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATcg < 1:9655561/51‑1 (MQ=255) cGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATcg > 1:6150525/1‑51 (MQ=255) cGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATcg > 1:7528005/1‑51 (MQ=255) gggATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATcgc > 1:4163137/1‑51 (MQ=255) ggATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATcgcg < 1:2948374/51‑1 (MQ=255) gATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGa > 1:5610006/1‑51 (MQ=255) aTTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGaa > 1:1881513/1‑51 (MQ=255) aTTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGaa < 1:6926118/51‑1 (MQ=255) aTTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGaa < 1:6970056/51‑1 (MQ=255) tttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGaaa > 1:1335173/1‑51 (MQ=255) tttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGaaa > 1:1763369/1‑51 (MQ=255) tttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGaaa > 1:4215368/1‑51 (MQ=255) ttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAg < 1:7106246/51‑1 (MQ=255) ttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAg > 1:2490977/1‑51 (MQ=255) ttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAg > 1:1621402/1‑51 (MQ=255) ttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAg < 1:8588293/51‑1 (MQ=255) ttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAg > 1:7099509/1‑51 (MQ=255) tAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGc > 1:880278/1‑51 (MQ=255) tAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGc > 1:7240094/1‑51 (MQ=255) tAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGc > 1:6938887/1‑51 (MQ=255) aGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCg > 1:10007440/1‑51 (MQ=255) aGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCg > 1:8604759/1‑51 (MQ=255) gTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGa > 1:4470610/1‑51 (MQ=255) ttGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAg > 1:9665267/1‑51 (MQ=255) ttGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAg > 1:6509730/1‑51 (MQ=255) ttGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAg < 1:5079842/51‑1 (MQ=255) gCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGtt < 1:753403/51‑1 (MQ=255) aaaTTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGtttt > 1:6004183/1‑51 (MQ=255) aaaTTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGtttt < 1:4183253/51‑1 (MQ=255) aaaTTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGtttt < 1:3235120/51‑1 (MQ=255) aaaTTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGtttt < 1:8285787/51‑1 (MQ=255) aaaTTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGtttt > 1:971732/1‑51 (MQ=255) aaTTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTg < 1:6286472/51‑1 (MQ=255) aTTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGa < 1:5853366/51‑1 (MQ=255) tttttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGAt > 1:6980480/1‑51 (MQ=255) tttttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGAt > 1:1146997/1‑51 (MQ=255) ttttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATa < 1:10387164/51‑1 (MQ=255) ttttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATa > 1:10474853/1‑51 (MQ=255) ttttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATa > 1:1899247/1‑51 (MQ=255) ttttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATa > 1:4349597/1‑51 (MQ=255) tttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAg < 1:8943636/51‑1 (MQ=255) tttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAg > 1:9918795/1‑51 (MQ=255) tttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAg > 1:6018412/1‑51 (MQ=255) tttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAg > 1:7210296/1‑51 (MQ=255) tttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAg > 1:10425157/1‑51 (MQ=255) tttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAg > 1:761612/1‑51 (MQ=255) tttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAg < 1:6378834/51‑1 (MQ=255) tttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAg > 1:1474655/1‑51 (MQ=255) ttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAgg < 1:9095418/51‑1 (MQ=255) ttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAgg < 1:5470457/51‑1 (MQ=255) ttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAgg > 1:9610663/1‑51 (MQ=255) ttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAgg < 1:3601456/51‑1 (MQ=255) tCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGa > 1:6086742/1‑51 (MQ=255) cAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGaa > 1:3401089/1‑51 (MQ=255) aaCATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGaaa > 1:7522676/1‑51 (MQ=255) cATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAAtt > 1:2119448/1‑51 (MQ=255) cATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAAtt > 1:10614009/1‑51 (MQ=255) cATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAAtt < 1:1659544/51‑1 (MQ=255) | AAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATTTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATT > REL606/1166081‑1166176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |