| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | REL606 | 943,554 | A→C | 100% | intergenic (‑53/+232) | infA ← / ← aat | translation initiation factor IF‑1/leucyl/phenylalanyl‑tRNA‑protein transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 943,554 | 0 | A | C | 100.0% | 405.2 / NA | 105 | intergenic (‑53/+232) | infA/aat | translation initiation factor IF‑1/leucyl/phenylalanyl‑tRNA‑protein transferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (46/59); total (46/59) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 105 total aligned reads displayed.
TCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGG > REL606/943506‑943601 | tCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGt < 1:1933316/51‑1 (MQ=255)tCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGt < 1:4799288/51‑1 (MQ=255)tCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGt < 1:8824139/51‑1 (MQ=255) ccTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGtt > 1:3564534/1‑51 (MQ=255) ccTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGtt < 1:7339054/51‑1 (MQ=255) ctctGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTc > 1:7966427/1‑51 (MQ=255) ctctGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTc > 1:161377/1‑51 (MQ=255) tctGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCt < 1:9092157/51‑1 (MQ=255) tctGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCt < 1:2944940/51‑1 (MQ=255) tctGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCt < 1:3271625/51‑1 (MQ=255) tctGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCt < 1:8892627/51‑1 (MQ=255) ctGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTg > 1:6106347/1‑51 (MQ=255) ctGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTg > 1:4649603/1‑51 (MQ=255) tGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGt > 1:8781302/1‑51 (MQ=255) tGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGt < 1:1275796/51‑1 (MQ=255) tGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGt > 1:7339273/1‑51 (MQ=255) tGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGt > 1:4695606/1‑51 (MQ=255) ggggTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTa < 1:3679163/51‑1 (MQ=255) ggggTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTa > 1:4525191/1‑51 (MQ=255) gggTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTaa < 1:2539236/51‑1 (MQ=255) gggTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTaa < 1:3036948/51‑1 (MQ=255) ggTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTaaa < 1:4004446/51‑1 (MQ=255) ggTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTaaa > 1:6537644/1‑51 (MQ=255) gTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAAt < 1:7451121/51‑1 (MQ=255) gTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAAt < 1:9067424/51‑1 (MQ=255) gTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAAt < 1:8198383/51‑1 (MQ=255) tATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATa > 1:9954010/1‑51 (MQ=255) tATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATa > 1:8523447/1‑51 (MQ=255) tATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATa > 1:1025556/1‑51 (MQ=255) tATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATa > 1:6709743/1‑51 (MQ=255) tATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATa < 1:7713113/51‑1 (MQ=255) tATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATa > 1:3883431/1‑51 (MQ=255) aTCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATaa < 1:10868965/51‑1 (MQ=255) aTCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATaa < 1:3149489/51‑1 (MQ=255) aTCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATaa < 1:7749550/51‑1 (MQ=255) aTCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATaa < 1:416661/51‑1 (MQ=255) aTCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATaa > 1:8718420/1‑51 (MQ=255) aTCACTACCGTAATTTGAACCGGCAAGACAATGCCGACGTTCTGTAAATaa > 1:10722873/1‑51 (MQ=38) tCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAg < 1:10719712/51‑1 (MQ=255) aCTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTa > 1:9346145/1‑51 (MQ=255) cTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTaa < 1:222142/51‑1 (MQ=255) cTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTaa < 1:9778344/51‑1 (MQ=255) tACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTaaa > 1:6815493/1‑51 (MQ=255) tACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTaaa > 1:6950757/1‑51 (MQ=255) tACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTaaa < 1:3364054/51‑1 (MQ=255) ccGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTa < 1:6158803/47‑1 (MQ=255) ccGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGa < 1:6590573/51‑1 (MQ=255) ccGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGa < 1:8927411/51‑1 (MQ=255) cGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGAt < 1:197481/51‑1 (MQ=255) cGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGAt > 1:8683520/1‑51 (MQ=255) cGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGAt > 1:10816949/1‑51 (MQ=255) cGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGAt > 1:6282146/1‑51 (MQ=255) cGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGAt > 1:9816565/1‑51 (MQ=255) gTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGAtt > 1:5205481/1‑51 (MQ=255) tAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGAttt < 1:3902121/51‑1 (MQ=255) tAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGAttt < 1:9572581/51‑1 (MQ=255) tAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGAttt < 1:10769142/51‑1 (MQ=255) tAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGAttt < 1:10812138/51‑1 (MQ=255) aaTTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTg < 1:5020779/51‑1 (MQ=255) aaTTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTg < 1:9786111/51‑1 (MQ=255) aaTTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTg < 1:10658934/51‑1 (MQ=255) aTTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgc > 1:4736071/1‑51 (MQ=255) aTTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgc < 1:712496/51‑1 (MQ=255) aTTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgc < 1:626873/51‑1 (MQ=255) aTTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgc > 1:7074700/1‑51 (MQ=255) tttGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgcg < 1:4472689/51‑1 (MQ=255) tGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgcgcg < 1:1695216/51‑1 (MQ=255) gAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgcgcgc > 1:4311362/1‑51 (MQ=255) gAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgcgcgc > 1:965236/1‑51 (MQ=255) gAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgcgcgc < 1:7643789/51‑1 (MQ=255) aaCCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCt > 1:9519968/1‑51 (MQ=255) aaCCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCt > 1:8514642/1‑51 (MQ=255) aaCCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCt > 1:8358825/1‑51 (MQ=255) aCCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTa < 1:877298/51‑1 (MQ=255) aCCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTa > 1:1149097/1‑51 (MQ=255) ccGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTaa > 1:7860839/1‑51 (MQ=255) ggCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAAt < 1:10606257/51‑1 (MQ=255) ggCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAAt < 1:3117024/51‑1 (MQ=255) gCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATc < 1:2514340/51‑1 (MQ=255) gCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATc < 1:3302600/51‑1 (MQ=255) cAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCg > 1:8918162/1‑51 (MQ=255) cAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCg > 1:6117299/1‑51 (MQ=255) aaGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGc > 1:3431728/1‑51 (MQ=255) aGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGca < 1:2629351/51‑1 (MQ=255) aGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGca > 1:1275126/1‑51 (MQ=255) gATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGcaa < 1:7132233/51‑1 (MQ=255) gATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGcaa < 1:419451/51‑1 (MQ=255) gATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGcaa < 1:7131180/51‑1 (MQ=255) tAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGcaaca > 1:5065243/1‑51 (MQ=255) tAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGcaaca > 1:3304373/1‑51 (MQ=255) aaTGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGcaacaa > 1:95164/1‑51 (MQ=255) aaTGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGcaacaa < 1:439808/51‑1 (MQ=255) tGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCaacaaac < 1:5423557/51‑1 (MQ=255) gCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCaacaaaca > 1:8424565/1‑51 (MQ=255) gCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCaacaaaca < 1:7606910/51‑1 (MQ=255) gCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCaacaaaca > 1:4154242/1‑51 (MQ=255) gCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCaacaaaca < 1:10246734/51‑1 (MQ=255) ccGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAg > 1:8653811/1‑51 (MQ=255) ccGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAg > 1:10620560/1‑51 (MQ=255) cGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAgg < 1:3921877/51‑1 (MQ=255) | TCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGG > REL606/943506‑943601 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |