| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | REL606 | 45,662 | C→T | 100% | V155I (GTC→ATC) | caiT ← | L‑carnitine/gamma‑butyrobetaine antiporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 45,662 | 0 | C | T | 100.0% | 442.2 / NA | 125 | V155I (GTC→ATC) | caiT | L‑carnitine/gamma‑butyrobetaine antiporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (66/59); total (66/59) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 125 total aligned reads displayed.
GGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGACTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACA > REL606/45614‑45709 | ggCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTg < 1:6622082/51‑1 (MQ=255)ggCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTg < 1:5553754/51‑1 (MQ=255) gCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGa < 1:4629950/51‑1 (MQ=255) gCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGa > 1:5782900/1‑51 (MQ=255) cGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGaa < 1:3978796/51‑1 (MQ=255) cGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGaa < 1:4851363/51‑1 (MQ=255) gAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGaaa > 1:2232513/1‑51 (MQ=255) gAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGaaa < 1:397218/51‑1 (MQ=255) gAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGaaa > 1:3101536/1‑51 (MQ=255) aaTCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAg < 1:10212707/51‑1 (MQ=255) aaTCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAg < 1:6557156/51‑1 (MQ=255) aaTCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAg < 1:6364210/51‑1 (MQ=255) aaTCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAg < 1:5413112/51‑1 (MQ=255) aaTCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAg < 1:834817/51‑1 (MQ=255) aTCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAgg < 1:6830428/51‑1 (MQ=255) tCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGa < 1:5815863/51‑1 (MQ=255) cACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGaa < 1:9816927/51‑1 (MQ=255) cACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGaa < 1:1189485/51‑1 (MQ=255) aCTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAg > 1:4824590/1‑51 (MQ=255) aCTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAg > 1:973108/1‑51 (MQ=255) cTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGc < 1:5150109/51‑1 (MQ=255) cTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGc > 1:6227074/1‑51 (MQ=255) cTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGc > 1:4159703/1‑51 (MQ=255) cTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGc > 1:4740408/1‑51 (MQ=255) cTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGc < 1:10210520/51‑1 (MQ=255) ttCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCt < 1:5750167/51‑1 (MQ=255) ttCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCt > 1:2526625/1‑51 (MQ=255) tCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTg < 1:10447998/51‑1 (MQ=255) tCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTg > 1:7229855/1‑51 (MQ=255) ccATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGt > 1:4571739/1‑51 (MQ=255) ccATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGt > 1:4863193/1‑51 (MQ=255) ccATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGt < 1:6619727/51‑1 (MQ=255) ccATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGt < 1:10420750/51‑1 (MQ=255) cATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTa > 1:9707020/1‑51 (MQ=255) aTTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTaa > 1:2563357/1‑51 (MQ=255) ttttGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAg > 1:869639/1‑51 (MQ=255) ttttGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAg < 1:8208091/51‑1 (MQ=255) tttGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGt > 1:6823913/1‑51 (MQ=255) tttGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGt > 1:5207792/1‑51 (MQ=255) ttGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTg > 1:4472793/1‑51 (MQ=255) ttGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTg < 1:9767071/51‑1 (MQ=255) ttGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTg < 1:1607846/51‑1 (MQ=255) ttGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTg < 1:7699284/51‑1 (MQ=255) tGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTgg > 1:2427073/1‑51 (MQ=255) gCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGc > 1:2421488/1‑51 (MQ=255) gCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGc > 1:8701056/1‑51 (MQ=255) ggACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGccc > 1:10045291/1‑51 (MQ=255) gACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCa < 1:9631231/51‑1 (MQ=255) aCAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCAc > 1:10207865/1‑51 (MQ=255) aCAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCAc > 1:6382099/1‑51 (MQ=255) aCAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCAc < 1:7778128/51‑1 (MQ=255) aCAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCAc < 1:8231315/51‑1 (MQ=255) cAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACg > 1:4467499/1‑51 (MQ=255) cAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACg < 1:5427878/51‑1 (MQ=255) aaaGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACgg < 1:8498/51‑1 (MQ=255) aagaagaagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGc > 1:1045965/1‑51 (MQ=255) agaagaagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCa > 1:10068263/1‑51 (MQ=255) agaagaagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCa < 1:1629218/51‑1 (MQ=255) agaagaagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCa < 1:9604610/51‑1 (MQ=255) agaagaagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCa < 1:3857151/51‑1 (MQ=255) agaagaagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCa > 1:88079/1‑51 (MQ=255) gaagaagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCag < 1:6941330/51‑1 (MQ=255) aagaagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCaga > 1:1480090/1‑51 (MQ=255) aagaagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCaga < 1:2108431/51‑1 (MQ=255) agaagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCagag > 1:3853397/1‑51 (MQ=255) agaagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCagag > 1:2630102/1‑51 (MQ=255) agaagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCagag > 1:5048615/1‑51 (MQ=255) gaagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAgg > 1:7720760/1‑51 (MQ=255) gaagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAgg > 1:1451493/1‑51 (MQ=255) aagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGt > 1:6884751/1‑51 (MQ=255) aagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGt > 1:10785328/1‑51 (MQ=255) aagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGt > 1:10559528/1‑51 (MQ=255) aagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGt < 1:10881184/51‑1 (MQ=255) gTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTcc > 1:10123103/1‑51 (MQ=255) gTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTcc < 1:86567/51‑1 (MQ=255) gTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTcc < 1:2026053/51‑1 (MQ=255) tAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTccc > 1:9317604/1‑51 (MQ=255) tAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTccc > 1:794075/1‑51 (MQ=255) aaGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTcccc < 1:10005963/51‑1 (MQ=255) aaGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTcccc > 1:3361606/1‑51 (MQ=255) aGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCa < 1:7431389/51‑1 (MQ=255) aGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCa > 1:2406555/1‑51 (MQ=255) aGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCa > 1:5426769/1‑51 (MQ=255) gCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAg > 1:5088924/1‑51 (MQ=255) gCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAg > 1:7641211/1‑51 (MQ=255) cGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGt < 1:9085205/51‑1 (MQ=255) cGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGt > 1:615969/1‑51 (MQ=255) cGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGt > 1:1492617/1‑51 (MQ=255) gAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTg > 1:9873274/1‑51 (MQ=255) gAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTg < 1:10041015/51‑1 (MQ=255) gAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTg < 1:4770052/51‑1 (MQ=255) gAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTg < 1:4866541/51‑1 (MQ=255) aaGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTgg > 1:9689413/1‑51 (MQ=255) aaGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTgg > 1:9023873/1‑51 (MQ=255) aGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGa > 1:6589629/1‑51 (MQ=255) aGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGa > 1:7359976/1‑51 (MQ=255) aGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGa < 1:4466824/51‑1 (MQ=255) gCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAAc < 1:1160133/51‑1 (MQ=255) gCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAAc > 1:5474097/1‑51 (MQ=255) cGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACa > 1:9193036/1‑51 (MQ=255) | GGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGACTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACA > REL606/45614‑45709 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |