Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 2,450 G→T 100% L705L (CTG→CTT thrA → bifunctional aspartokinase I/homeserine dehydrogenase I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*REL6062,4500GT100.0% 382.3 / NA 108L705L (CTG→CTTthrAbifunctional aspartokinase I/homeserine dehydrogenase I
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (56/52);  total (56/52)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 113 total aligned reads displayed.

AACGGGACGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTGCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTATGGCGAA  >  REL606/2402‑2497
                                                |                                               
aaCGGGACGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTcc                                               >  1:6836175/1‑51 (MQ=255)
aaCGGGACGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTcc                                               <  1:2598640/51‑1 (MQ=255)
aaCGGGACGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTcc                                               >  1:5168081/1‑51 (MQ=255)
aaCGGGACGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTcc                                               >  1:10890291/1‑51 (MQ=255)
 aCGGGACGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTccc                                              <  1:10735608/51‑1 (MQ=255)
 aCGGGACGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTccc                                              <  1:2446278/51‑1 (MQ=255)
 aCGGGACGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTccc                                              >  1:7885124/1‑51 (MQ=255)
 aCGGGACGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTccc                                              <  1:860814/51‑1 (MQ=255)
   gggACGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGc                                            >  1:6725419/1‑51 (MQ=255)
   gggACGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGc                                            >  1:3868053/1‑51 (MQ=255)
   gggACGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGc                                            >  1:6928036/1‑51 (MQ=255)
    ggACGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGc                                            <  1:8841625/50‑1 (MQ=255)
     gACGTGAACTGGAGCTGGCGGATATTGAAATTCAACCTGTGCTTCCCGCag                                          >  1:9196826/1‑51 (MQ=38)
      aCGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCaga                                         <  1:3237737/51‑1 (MQ=255)
      aCGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCaga                                         <  1:9260042/51‑1 (MQ=255)
      aCGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCaga                                         <  1:2534549/51‑1 (MQ=255)
       cGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCagag                                        <  1:9130179/51‑1 (MQ=255)
       cGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCagag                                        >  1:2473504/1‑51 (MQ=255)
        gTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGt                                       >  1:754369/1‑51 (MQ=255)
        gTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGt                                       >  1:6009445/1‑51 (MQ=255)
        gTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGt                                       >  1:3827445/1‑51 (MQ=255)
         tGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGtt                                      <  1:3545906/51‑1 (MQ=255)
         tGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGtt                                      >  1:2203441/1‑51 (MQ=255)
         tGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGtt                                      >  1:4054544/1‑51 (MQ=255)
         tGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGtt                                      <  1:4961986/51‑1 (MQ=255)
          gAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGttt                                     >  1:749416/1‑51 (MQ=255)
          gAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGttt                                     <  1:5573831/51‑1 (MQ=255)
          gAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGttt                                     <  1:975145/51‑1 (MQ=255)
          gAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGttt                                     <  1:4987434/51‑1 (MQ=255)
            aCTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTaa                                   <  1:7195997/51‑1 (MQ=255)
            aCTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTaa                                   >  1:4586177/1‑51 (MQ=255)
             cTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAAc                                  >  1:2284298/1‑51 (MQ=255)
              tGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACg                                 >  1:6820977/1‑51 (MQ=255)
              tGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACg                                 >  1:9067412/1‑51 (MQ=255)
              tGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACg                                 >  1:4504891/1‑51 (MQ=255)
              tGGAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACg                                 >  1:2408663/1‑51 (MQ=255)
               ggAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGc                                >  1:1614204/1‑51 (MQ=255)
                gAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCt                               <  1:7466348/51‑1 (MQ=255)
                gAGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCt                               >  1:5416920/1‑51 (MQ=255)
                 aGCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTg                              <  1:9850543/51‑1 (MQ=255)
                  gCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTGa                             >  1:8962892/1‑51 (MQ=255)
                  gCTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTGa                             <  1:7471320/51‑1 (MQ=255)
                   cTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTGAg                            >  1:7962480/1‑51 (MQ=255)
                   cTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTGAg                            >  1:5579819/1‑51 (MQ=255)
                   cTGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTGAg                            <  1:8690948/51‑1 (MQ=255)
                    tGGCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTGAgg                           <  1:8925980/51‑1 (MQ=255)
                     ggCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTGAggg                          >  1:2814277/1‑51 (MQ=255)
                     ggCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTGAggg                          >  1:10497224/1‑51 (MQ=255)
                      gCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGt                         <  1:3657594/51‑1 (MQ=255)
                      gCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGt                         <  1:1458823/51‑1 (MQ=255)
                      gCGGATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGt                         <  1:7095378/51‑1 (MQ=255)
                         gATATTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCt                               <  1:5347316/42‑1 (MQ=255)
                          atatTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATg                     <  1:5879522/51‑1 (MQ=255)
                          atatTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATg                     >  1:4412443/1‑51 (MQ=255)
                          atatTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATg                     >  1:1838233/1‑51 (MQ=255)
                          atatTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATg                     >  1:663413/1‑51 (MQ=255)
                          atatTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATg                     >  1:5781102/1‑51 (MQ=255)
                           tatTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGt                    <  1:3792883/51‑1 (MQ=255)
                           tatTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGt                    <  1:10432228/51‑1 (MQ=255)
                           tatTGAAATTGAACCTGTGCTTCCCGCAGAGTTTAACACTGAGGGTGATGt                    <  1:8278295/51‑1 (MQ=255)
                             ttgaaattgaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTg                  <  1:8290467/51‑1 (MQ=255)
                              tgaaattgaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGc                 >  1:6440797/1‑51 (MQ=255)
                              tgaaattgaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGc                 <  1:2685666/51‑1 (MQ=255)
                              tgaaattgaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGc                 >  1:5118647/1‑51 (MQ=255)
                              tgaaattgaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGc                 >  1:6180478/1‑51 (MQ=255)
                              tgaaattgaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGc                 >  1:10182020/1‑51 (MQ=255)
                              tgaaattgaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGc                 <  1:1935968/51‑1 (MQ=255)
                               gaaattgaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGcc                <  1:2916990/51‑1 (MQ=255)
                                aaattgaaCCTGTGCTTCCCGCAGAGTTTAACGCTTAGGGTGATGTTGCCg               >  1:2059101/1‑51 (MQ=255)
                                aaattgaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCg               >  1:5960734/1‑51 (MQ=255)
                                aaattgaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCg               <  1:7741894/51‑1 (MQ=255)
                                 aattgaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGc              <  1:9799557/51‑1 (MQ=255)
                                  attgaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCt             >  1:1179612/1‑51 (MQ=255)
                                   ttgaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCtt            >  1:624030/1‑51 (MQ=255)
                                   ttgaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCtt            <  1:2214484/51‑1 (MQ=255)
                                    tgaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCttt           <  1:6365423/51‑1 (MQ=255)
                                    tgaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCttt           <  1:3982730/51‑1 (MQ=255)
                                    tgaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCttt           >  1:4670319/1‑51 (MQ=255)
                                     gaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCtttt          <  1:6396651/51‑1 (MQ=255)
                                     gaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCtttt          <  1:10854768/51‑1 (MQ=255)
                                     gaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCtttt          <  1:9084138/51‑1 (MQ=255)
                                     gaaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCtttt          >  1:5867204/1‑51 (MQ=255)
                                      aaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTa         >  1:9882730/1‑51 (MQ=255)
                                      aaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTa         <  1:9069274/51‑1 (MQ=255)
                                      aaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTa         <  1:708607/51‑1 (MQ=255)
                                      aaCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTa         <  1:5931168/51‑1 (MQ=255)
                                       aCCTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTAt        >  1:2502188/1‑51 (MQ=255)
                                        ccTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTATg       <  1:9394558/51‑1 (MQ=255)
                                         cTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTATgg      >  1:8914136/1‑51 (MQ=255)
                                         cTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTATgg      >  1:772045/1‑51 (MQ=255)
                                         cTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTATgg      >  1:3498679/1‑51 (MQ=255)
                                         cTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTATgg      >  1:5581788/1‑51 (MQ=255)
                                         cTGTGCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTATgg      <  1:2031879/51‑1 (MQ=255)
                                          tgtgCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTATGGc     >  1:5892876/1‑51 (MQ=255)
                                          tgtgCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTATGGc     >  1:8726085/1‑51 (MQ=255)
                                          tgtgCTTCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTATGGc     >  1:10347689/1‑51 (MQ=255)
                                            tgcttcCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTATGGCGa   >  1:411193/1‑51 (MQ=255)
                                            tgcttcCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTATGGCGa   >  1:7771379/1‑51 (MQ=255)
                                             gcttcCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTATGGCGaa  <  1:9504694/51‑1 (MQ=255)
                                             gcttcCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTATGGCGaa  <  1:2601280/51‑1 (MQ=255)
                                                |                                               
AACGGGACGTGAACTGGAGCTGGCGGATATTGAAATTGAACCTGTGCTGCCCGCAGAGTTTAACGCTGAGGGTGATGTTGCCGCTTTTATGGCGAA  >  REL606/2402‑2497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: