| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,138 bp | 100% | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893584–3894993 | 3901134 | 6142–7551 | 56 [51] | [0] 227 | insJ‑5–[yieO] | insJ‑5,insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3894996 | NA (NA) | 133 (1.440) | 64/78 | NT | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901135 = | 0 (0.000) | coding (1285/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
GGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA > REL606/3893533‑3893601 | ggTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa < 1:5870255/51‑1 (MQ=255)ggTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa < 1:10662479/51‑1 (MQ=255)ggTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa < 1:73816/51‑1 (MQ=255)ggTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa < 1:1196949/51‑1 (MQ=255)ggTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa > 1:8067677/1‑51 (MQ=255) gTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaaa < 1:6232133/51‑1 (MQ=255) tCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt < 1:3402796/51‑1 (MQ=255) tCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:1611691/1‑51 (MQ=255) tCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:4764188/1‑51 (MQ=255) tCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:7241292/1‑51 (MQ=255) tCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:3884355/1‑51 (MQ=255) tgAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATg < 1:4644043/50‑1 (MQ=255) cGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATg < 1:1657444/51‑1 (MQ=255) cGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATg < 1:5284079/51‑1 (MQ=255) gAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATgg > 1:8266121/1‑51 (MQ=255) gAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATgg < 1:352128/51‑1 (MQ=255) gAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATgg < 1:10766570/51‑1 (MQ=255) aaaTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGa > 1:307292/1‑51 (MQ=255) aaaTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGa < 1:10257247/51‑1 (MQ=255) aaTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa < 1:2194596/51‑1 (MQ=255) aaTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa > 1:7376165/1‑51 (MQ=255) aTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt > 1:4350688/1‑51 (MQ=255) aTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt > 1:5283302/1‑51 (MQ=255) aTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt < 1:7582427/51‑1 (MQ=255) aTCTAACGCCAGACTGTACTGCACCCA‑TTTGTTGGACGATGAAATGGAATa < 1:9248119/51‑1 (MQ=255) tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:2063118/51‑1 (MQ=255) tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa > 1:7973901/1‑51 (MQ=255) tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:5499956/51‑1 (MQ=255) tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:2203008/51‑1 (MQ=255) tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:2270214/51‑1 (MQ=255) cTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAg > 1:4635512/1‑51 (MQ=255) cTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAg > 1:8019158/1‑51 (MQ=255) tAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGc > 1:7513431/1‑51 (MQ=255) aaCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:2925144/48‑1 (MQ=255) aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc > 1:4461796/1‑51 (MQ=255) aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc > 1:4292986/1‑51 (MQ=255) aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc < 1:7191698/51‑1 (MQ=255) aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc < 1:7007078/51‑1 (MQ=255) cGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 1:6720716/1‑51 (MQ=255) cGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 1:6529167/1‑51 (MQ=255) cGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 1:6687293/1‑51 (MQ=255) gCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt < 1:7438542/51‑1 (MQ=255) gCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt < 1:5765465/51‑1 (MQ=255) gCCAGACTGTACTGCACCCATTTTGTTAGACGATGAAATGGAATAGCCCCt < 1:7731718/51‑1 (MQ=255) ccAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa > 1:4956105/1‑51 (MQ=40) ccAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa > 1:4020073/1‑51 (MQ=40) cAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa < 1:894067/51‑1 (MQ=38) cAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa < 1:5529550/51‑1 (MQ=38) cAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa > 1:5837419/1‑51 (MQ=38) aGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat < 1:776138/51‑1 (MQ=35) aGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat < 1:2958245/51‑1 (MQ=35) aGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat > 1:6644406/1‑51 (MQ=35) aGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat < 1:10913548/51‑1 (MQ=35) aGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat < 1:2664828/51‑1 (MQ=35) gACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata < 1:5119266/51‑1 (MQ=33) gACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata < 1:2816290/51‑1 (MQ=33) | GGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA > REL606/3893533‑3893601 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |