Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 2,034,358 Δ19,491 bp 100% [insB‑14][wcaJ] 20 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 2034358–2035096 2053848 18753–19491 101 [0] [1] 98 [insB‑14]–[wcaJ] [insB‑14],insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,[wcaJ]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 20343570 (0.000)77 (0.810) 45/80 NT 99.4% noncoding (737/768 nt) IS1 repeat region
?REL606 2053849 = 1 (0.010)coding (823/1395 nt) wcaJ predicted UDP‑glucose lipid carrier transferase

Only 100 of 101 total aligned reads displayed.

AGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAG  >  REL606/2034307‑2034407
                                                  |                                                  
agaagTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTa                                                    >  1:1580161/1‑51 (MQ=255)
agaagTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTa                                                    >  1:7101380/1‑51 (MQ=255)
agaagTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTa                                                    <  1:4812664/51‑1 (MQ=255)
agaagTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTa                                                    <  1:10353051/51‑1 (MQ=255)
 gaagTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTa                                                    <  1:6366103/50‑1 (MQ=255)
 gAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAg                                                   <  1:1965365‑M1/51‑2 (MQ=255)
 gAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAg                                                   <  1:5981553‑M1/51‑2 (MQ=255)
   aGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtt                                                 >  1:6562462‑M1/1‑48 (MQ=255)
   aGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtt                                                 >  1:1851266‑M1/1‑48 (MQ=255)
   aGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtt                                                 >  1:10100600‑M1/1‑48 (MQ=255)
   aGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtt                                                 >  1:1098574‑M1/1‑48 (MQ=255)
    gTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgttt                                                <  1:1358579‑M1/51‑5 (MQ=255)
     tCTAACAAATATCCGGTAATGGCTCCAACTTATTGATAGTGTTTTAgtttg                                               <  1:5100395‑M1/51‑6 (MQ=255)
     tCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttg                                               <  1:8087113‑M1/51‑6 (MQ=255)
     tCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttg                                               <  1:1109620‑M1/51‑6 (MQ=255)
     tCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttg                                               <  1:10214591‑M1/51‑6 (MQ=255)
     tCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttg                                               <  1:2796552‑M1/51‑6 (MQ=255)
     tCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttg                                               >  1:1997273‑M1/1‑46 (MQ=255)
      cTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttga                                              <  1:10941204‑M1/51‑7 (MQ=255)
      cTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttga                                              <  1:9338150‑M1/51‑7 (MQ=255)
      cTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttga                                              <  1:8434014‑M1/51‑7 (MQ=255)
      cTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttga                                              >  1:10929170‑M1/1‑45 (MQ=255)
       tAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgag                                             >  1:5862817‑M1/1‑44 (MQ=255)
       tAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgag                                             <  1:9341540‑M1/51‑8 (MQ=255)
       tAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgag                                             >  1:498536‑M1/1‑44 (MQ=255)
       tAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgag                                             >  1:6515830‑M1/1‑44 (MQ=255)
        aaCAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagc                                            <  1:1146203‑M1/51‑9 (MQ=255)
        aaCAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagc                                            <  1:4096229‑M1/51‑9 (MQ=255)
          cAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcag                                          <  1:7824349‑M1/51‑11 (MQ=255)
          cAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcag                                          <  1:5664032‑M1/51‑11 (MQ=255)
           aaaTATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcagg                                         >  1:10561723‑M1/1‑40 (MQ=255)
           aaaTATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcagg                                         >  1:3812820‑M1/1‑40 (MQ=255)
           aaaTATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcagg                                         <  1:7252045‑M1/51‑12 (MQ=255)
           aaaTATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcagg                                         <  1:6683826‑M1/51‑12 (MQ=255)
            aaTATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggc                                        <  1:10939081‑M1/51‑13 (MQ=255)
            aaTATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggc                                        <  1:10639903‑M1/51‑13 (MQ=255)
            aaTATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggc                                        <  1:6493317‑M1/51‑13 (MQ=255)
            aaTATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggc                                        <  1:3634878‑M1/51‑13 (MQ=255)
             atatCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcg                                       <  1:10731965‑M1/51‑14 (MQ=255)
              tatCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcgg                                      <  1:5748839‑M1/51‑15 (MQ=255)
               atCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggt                                     >  1:9876031‑M1/1‑36 (MQ=255)
               atCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggt                                     <  1:151241‑M1/51‑16 (MQ=255)
               atCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggt                                     <  1:5149768‑M1/51‑16 (MQ=255)
               atCCGATAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggt                                     >  1:950745‑M1/1‑36 (MQ=255)
                tCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggtt                                    >  1:360576‑M1/1‑35 (MQ=255)
                tCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggtt                                    <  1:8060601‑M1/51‑17 (MQ=255)
                 ccGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggtta                                   >  1:4834784‑M1/1‑34 (MQ=255)
                  cGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaa                                  <  1:3510288‑M1/51‑19 (MQ=255)
                  cGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaa                                  <  1:3261418‑M1/51‑19 (MQ=255)
                    gTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaacc                                <  1:5396708‑M1/51‑21 (MQ=255)
                      aaTGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaacccc                              >  1:10306217‑M1/1‑29 (MQ=255)
                      aaTGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaacccc                              <  1:6497735‑M1/51‑23 (MQ=255)
                       aTGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccg                             <  1:7307971‑M1/51‑24 (MQ=255)
                       aTGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccg                             <  1:10901710‑M1/51‑24 (MQ=255)
                        tGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccgg                            >  1:9514222‑M1/1‑27 (MQ=255)
                        tGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccc                               >  1:10526561‑M1/1‑27 (MQ=255)
                         gACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccgga                           >  1:3903622‑M1/1‑26 (MQ=255)
                         gACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccgga                           >  1:9226785‑M1/1‑26 (MQ=255)
                         gACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccgga                           <  1:8653864‑M1/51‑26 (MQ=255)
                          aCTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaa                          <  1:9977049‑M1/51‑27 (MQ=255)
                           cTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaa                         <  1:4539638‑M1/51‑28 (MQ=255)
                           cTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaa                         <  1:10484224‑M1/51‑28 (MQ=255)
                           cTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaa                         <  1:5211102‑M1/51‑28 (MQ=255)
                           cTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaa                         <  1:5976097‑M1/51‑28 (MQ=255)
                           cTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaa                         <  1:112930‑M1/51‑28 (MQ=255)
                             ccAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagc                       <  1:6593323‑M1/51‑30 (MQ=255)
                              cAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcg                      <  1:1218219‑M1/51‑31 (MQ=255)
                              cAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcg                      <  1:9191289‑M1/51‑31 (MQ=255)
                              cAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcg                      >  1:8498012‑M1/1‑21 (MQ=255)
                               aaCTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcgg                     >  1:7868760‑M1/1‑20 (MQ=255)
                               aaCTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcgg                     <  1:291932‑M1/51‑32 (MQ=255)
                                aCTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggc                    <  1:2768062‑M1/51‑33 (MQ=255)
                                aCTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggc                    <  1:3081625‑M1/51‑33 (MQ=255)
                                 cTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcg                   >  1:5006328‑M1/1‑18 (MQ=255)
                                 cTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaa                          >  1:1277329‑M1/1‑18 (MQ=255)
                                  ttATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgt                  >  1:6562101‑M1/1‑17 (MQ=255)
                                  ttATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgt                  >  1:7313135‑M1/1‑17 (MQ=255)
                                  ttATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgt                  >  1:8879832‑M1/1‑17 (MQ=255)
                                   tATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtg                 >  1:6500226‑M1/1‑16 (MQ=255)
                                   tATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtg                 >  1:140396‑M1/1‑16 (MQ=255)
                                    aTTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgt                >  1:7215888‑M1/1‑15 (MQ=255)
                                    aTTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgt                <  1:1542110‑M1/51‑37 (MQ=255)
                                    aTTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgt                >  1:820640‑M1/1‑15 (MQ=255)
                                    aTTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagc                       <  1:4803033‑M1/44‑30 (MQ=255)
                                      tGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtca              >  1:9747651‑M1/1‑13 (MQ=255)
                                      tGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtca              >  1:1131321‑M1/1‑13 (MQ=255)
                                      tGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtca              >  1:5298369‑M1/1‑13 (MQ=255)
                                       gATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcat             <  1:5981692‑M1/51‑40 (MQ=255)
                                        aTAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcata            <  1:2786583‑M1/51‑41 (MQ=255)
                                         tAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatac           >  1:4358551‑M1/1‑10 (MQ=255)
                                         tAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatac           <  1:7692586‑M1/51‑42 (MQ=255)
                                          aGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcataca          <  1:6518118‑M1/51‑43 (MQ=255)
                                            tgtTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagc        <  1:7957233‑M1/51‑45 (MQ=255)
                                             gtTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcg       <  1:2913619‑M1/51‑46 (MQ=255)
                                              ttttAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcgg      >  1:7055920‑M1/1‑5 (MQ=255)
                                              ttttAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcgg      >  1:8275795‑M1/1‑5 (MQ=255)
                                              ttttAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcgg      <  1:1777341‑M1/51‑47 (MQ=255)
                                                ttAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggca    <  1:4272671‑M1/51‑49 (MQ=255)
                                                 tAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcac   <  1:8566090‑M1/51‑50 (MQ=255)
                                                  agtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcacc  <  1:4194076‑M1/51‑51 (MQ=255)
                                                  |                                                  
AGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAG  >  REL606/2034307‑2034407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: