New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3894996NA (NA)111 (1.170) 58/80 NT 100% noncoding (1443/1443 nt) IS150 repeat region
?REL606 4049580 = 0 (0.000)coding (324/1242 nt) yihS predicted glucosamine isomerase

Only 100 of 152 total aligned reads displayed.

GACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGCCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCC  >  REL606/4049532‑4049630
                                                |                                                  
gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  <  1:10042167‑M2/3‑1 (MQ=255)
gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  <  1:9086760‑M2/3‑1 (MQ=255)
gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  <  1:7999790‑M2/3‑1 (MQ=255)
gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  >  1:10445021‑M2/49‑51 (MQ=255)
gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  <  1:7839544‑M2/3‑1 (MQ=255)
gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  <  1:7707056‑M2/3‑1 (MQ=255)
gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  <  1:7041658‑M2/3‑1 (MQ=255)
gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  <  1:6960942‑M2/3‑1 (MQ=255)
gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  <  1:6816201‑M2/3‑1 (MQ=255)
gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  >  1:9860142‑M2/49‑51 (MQ=255)
gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  >  1:4290947‑M2/49‑51 (MQ=255)
gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  <  1:2351153‑M2/3‑1 (MQ=255)
gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacattt                                                  >  1:1679166‑M2/49‑51 (MQ=255)
 acctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTg                                                 >  1:6495200‑M2/48‑51 (MQ=255)
  cctatatgcctcgtgtttaactgtccaactttttggggtcagtacatttnc                                                <  1:2215811‑M2/5‑3 (MQ=255)
  cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTgg                                                <  1:8669023‑M2/5‑1 (MQ=255)
  cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTgg                                                <  1:6595506‑M2/5‑1 (MQ=255)
   ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGa                                               >  1:5310376‑M2/46‑51 (MQ=255)
   ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGa                                               <  1:10670782‑M2/6‑1 (MQ=255)
   ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGa                                               <  1:5709405‑M2/6‑1 (MQ=255)
    tatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAg                                              <  1:3872172‑M2/7‑1 (MQ=255)
    tatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAg                                              <  1:10047259‑M2/7‑1 (MQ=255)
    tatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAg                                              <  1:8838395‑M2/7‑1 (MQ=255)
    tatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAg                                              <  1:4426930‑M2/7‑1 (MQ=255)
     atatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAgg                                             <  1:1617655‑M2/8‑1 (MQ=255)
      tatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGc                                            >  1:4609051‑M2/43‑51 (MQ=255)
      tatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGc                                            >  1:231131‑M2/43‑51 (MQ=255)
       atgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCa                                           <  1:10840701‑M2/10‑1 (MQ=255)
       atgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCa                                           <  1:7828276‑M2/10‑1 (MQ=255)
           ctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATcca                                       <  1:6358601‑M2/14‑1 (MQ=255)
           ctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATcca                                       >  1:3105264‑M2/38‑51 (MQ=255)
           ctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATcca                                       <  1:9688384‑M2/14‑1 (MQ=255)
           ctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATcca                                       >  1:9286192‑M2/38‑51 (MQ=255)
            tcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATccac                                      >  1:7089123‑M2/37‑51 (MQ=255)
             cgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATccacc                                     >  1:4378445‑M2/36‑51 (MQ=255)
              gtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATccacca                                    >  1:5178473‑M2/35‑51 (MQ=255)
               tgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCcaccac                                   <  1:8432464‑M2/18‑1 (MQ=255)
                gtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACg                                  >  1:6582732‑M2/33‑51 (MQ=255)
                gtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACg                                  <  1:3348425‑M2/19‑1 (MQ=255)
                gtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACg                                  <  1:5926790‑M2/19‑1 (MQ=255)
                 tttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGc                                 >  1:5458094‑M2/32‑51 (MQ=255)
                 tttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGc                                 <  1:4205823‑M2/20‑1 (MQ=255)
                  ttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGcc                                >  1:7129972‑M2/31‑51 (MQ=255)
                   taactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGccc                               >  1:3523906‑M2/30‑51 (MQ=255)
                     actgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTc                             <  1:9584799‑M2/24‑1 (MQ=255)
                      ctgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCg                            >  1:3647742‑M2/27‑51 (MQ=255)
                       tgtccaactttttggggtcagtacaTTTGGAGGCATCCACCGCGCCCTCGt                           <  1:9431261‑M2/26‑1 (MQ=255)
                       tgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGt                           >  1:1388317‑M2/26‑51 (MQ=255)
                       tgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGt                           <  1:9294439‑M2/26‑1 (MQ=255)
                        gtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTc                          <  1:7346994‑M2/27‑1 (MQ=255)
                         tccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCa                         <  1:1733718‑M2/28‑1 (MQ=255)
                         tccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCa                         <  1:4061361‑M2/28‑1 (MQ=255)
                         tccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCa                         >  1:9252321‑M2/24‑51 (MQ=255)
                          ccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCAt                        >  1:8908646‑M2/23‑51 (MQ=255)
                           caactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCAtt                       >  1:9707572‑M2/22‑51 (MQ=255)
                             actttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCa                     >  1:4010440‑M2/20‑51 (MQ=255)
                             actttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCa                     <  1:9656412‑M2/32‑1 (MQ=255)
                             actttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCa                     <  1:1170126‑M2/32‑1 (MQ=255)
                              ctttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCAc                    >  1:2137194‑M2/19‑51 (MQ=255)
                               tttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACg                   >  1:6892001‑M2/18‑51 (MQ=255)
                               tttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACg                   >  1:1062406‑M2/18‑51 (MQ=255)
                               tttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACg                   >  1:5311071‑M2/18‑51 (MQ=255)
                                ttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGc                  >  1:7214788‑M2/17‑51 (MQ=255)
                                ttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGc                  >  1:7394543‑M2/17‑51 (MQ=255)
                                ttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGc                  >  1:4186067‑M2/17‑51 (MQ=255)
                                ttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGc                  >  1:6166211‑M2/17‑51 (MQ=255)
                                ttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGc                  <  1:9767218‑M2/35‑1 (MQ=255)
                                ttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGc                  >  1:6981364‑M2/17‑51 (MQ=255)
                                 tttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCa                 >  1:6345027‑M2/16‑51 (MQ=255)
                                 tttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCa                 >  1:8508587‑M2/16‑51 (MQ=255)
                                 tttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCa                 >  1:473325‑M2/16‑51 (MQ=255)
                                 tttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCa                 >  1:5006826‑M2/16‑51 (MQ=255)
                                 tttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCa                 <  1:7739267‑M2/36‑1 (MQ=255)
                                  ttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAg                >  1:2389910‑M2/15‑51 (MQ=255)
                                  ttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAg                >  1:3531366‑M2/15‑51 (MQ=255)
                                   tggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAgg               >  1:6543861‑M2/14‑51 (MQ=255)
                                   tggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAgg               >  1:2551634‑M2/14‑51 (MQ=255)
                                    ggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGc              <  1:7213490‑M2/39‑1 (MQ=255)
                                     gggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCa             <  1:8625335‑M2/40‑1 (MQ=255)
                                      ggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCAt            <  1:5137123‑M2/41‑1 (MQ=255)
                                        tcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAc          <  1:3758396‑M2/43‑1 (MQ=255)
                                        tcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAc          <  1:3423697‑M2/43‑1 (MQ=255)
                                        tcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAc          <  1:6732219‑M2/43‑1 (MQ=255)
                                         cagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAcc         >  1:10431035‑M2/8‑51 (MQ=255)
                                          agtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCa        <  1:388415‑M2/45‑1 (MQ=255)
                                          agtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCa        <  1:8262662‑M2/45‑1 (MQ=255)
                                          agtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCa        <  1:1415752‑M2/45‑1 (MQ=255)
                                          agtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCa        <  1:1363297‑M2/45‑1 (MQ=255)
                                           gtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAg       <  1:7067591‑M2/46‑1 (MQ=255)
                                           gtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAg       >  1:4967034‑M2/6‑51 (MQ=255)
                                            tacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgc      >  1:1978405‑M2/5‑51 (MQ=255)
                                            tacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgc      <  1:6086031‑M2/47‑1 (MQ=255)
                                             acaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgcc     <  1:2919360‑M2/48‑1 (MQ=255)
                                             acaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgcc     <  1:6030640‑M2/48‑1 (MQ=255)
                                              caTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccg    >  1:2931343‑M2/3‑51 (MQ=255)
                                               aTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccgc   >  1:6748605‑M2/2‑51 (MQ=255)
                                               aTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccgc   >  1:7623120‑M2/2‑51 (MQ=255)
                                               aTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccgc   >  1:2589913‑M2/2‑51 (MQ=255)
                                               aTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccgc   <  1:4183642‑M2/50‑1 (MQ=255)
                                               aTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccgc   <  1:5865296‑M2/50‑1 (MQ=255)
                                                |                                                  
GACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGCCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCC  >  REL606/4049532‑4049630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.