| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,138 bp | 100% | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893584–3894993 | 3901134 | 6142–7551 | 56 [51] | [0] 227 | insJ‑5–[yieO] | insJ‑5,insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3894996 | NA (NA) | 133 (1.440) | 64/78 | NT | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901135 = | 0 (0.000) | coding (1285/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
Only 100 of 227 total aligned reads displayed.
TGCTGCTGAAGCAACAGTAATAATGCCCATTGTGATAAACGTATAGTGGAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGG > REL606/3901085‑3901185 | cagacctatatggctcgtgtttaactgtccaactttttggggtcagtacaa < 1:4211686‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:9591687‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:9412679‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:4133710‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:9315572‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:7874152‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:3561686‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:10577919‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:4802251‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:4871862‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:9021479‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:8676476‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:1410611‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:1523159‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:8600357‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:1677948‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:8558467‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:1995597‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:5298575‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:6296859‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:2254893‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:7346102‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:7217240‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:7197758‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:3150197‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:6976315‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:313060‑M2/51‑51 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAt > 1:5102758‑M2/50‑51 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAt > 1:9246762‑M2/50‑51 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAt < 1:10151574‑M2/2‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAt < 1:10316881‑M2/2‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAt < 1:10796898‑M2/2‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAt > 1:3940426‑M2/50‑51 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAtt > 1:9086098‑M2/49‑51 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTg < 1:3614527‑M2/4‑1 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGt < 1:8505249‑M2/5‑1 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCg < 1:7022300‑M2/8‑1 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCg > 1:6610225‑M2/44‑51 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGAc > 1:9836036‑M2/42‑51 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGAc > 1:6886008‑M2/42‑51 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGAc < 1:5021429‑M2/10‑1 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACa > 1:9165914‑M2/41‑51 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACa > 1:3787626‑M2/41‑51 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACa > 1:3997347‑M2/41‑51 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTc > 1:10032813‑M2/38‑51 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTc > 1:3243210‑M2/38‑51 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTc > 1:903123‑M2/38‑51 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTc < 1:4085363‑M2/14‑1 (MQ=255) tcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAg > 1:318218‑M2/37‑48 (MQ=255) tcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCg > 1:2241307‑M2/37‑51 (MQ=255) tcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCg > 1:6556053‑M2/37‑51 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCg < 1:5924077‑M2/15‑1 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGtt < 1:6697684‑M2/17‑1 (MQ=255) tgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtg < 1:5145031‑M2/18‑1 (MQ=255) gtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtgt < 1:5190254‑M2/19‑1 (MQ=255) gtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtgt > 1:1632358‑M2/33‑51 (MQ=255) gtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtgt < 1:2720035‑M2/19‑1 (MQ=255) tttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtgtg > 1:5452614‑M2/32‑51 (MQ=255) tttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtgtg > 1:6451712‑M2/32‑51 (MQ=255) tttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtgtg < 1:668211‑M2/20‑1 (MQ=255) taactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGcc > 1:2818520‑M2/30‑51 (MQ=255) aactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCt < 1:10215723‑M2/23‑1 (MQ=255) ctgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTc > 1:2907416‑M2/27‑51 (MQ=255) tgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTcc > 1:8900051‑M2/26‑51 (MQ=255) caactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTc > 1:7947540‑M2/22‑51 (MQ=255) aactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTcc > 1:9639726‑M2/21‑51 (MQ=255) aactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTcc < 1:7462171‑M2/31‑1 (MQ=255) tttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTc > 1:10720813‑M2/18‑51 (MQ=255) tttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTc > 1:2576604‑M2/18‑51 (MQ=255) tttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTc > 1:6114194‑M2/18‑51 (MQ=255) tttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTCCCATTCCTTc > 1:8241929‑M2/18‑51 (MQ=255) ttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCa < 1:6820270‑M2/35‑1 (MQ=255) ttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCa > 1:3473907‑M2/17‑51 (MQ=255) tttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCAt < 1:10035049‑M2/36‑1 (MQ=255) tttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCAt > 1:1813763‑M2/16‑51 (MQ=255) ttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATa > 1:8635894‑M2/15‑51 (MQ=255) tggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATaa < 1:2147538‑M2/38‑1 (MQ=255) tggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATaa < 1:1218835‑M2/38‑1 (MQ=255) ggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATaaa < 1:3434831‑M2/39‑1 (MQ=255) gggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAAc > 1:8390345‑M2/12‑51 (MQ=255) gggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAAc < 1:4577488‑M2/40‑1 (MQ=255) ggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAAcg > 1:5604710‑M2/11‑51 (MQ=255) gtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAAcgc < 1:7164628‑M2/42‑1 (MQ=255) gtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAAcgc < 1:638765‑M2/42‑1 (MQ=255) cagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGa > 1:127114‑M2/8‑51 (MQ=255) agtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGaa < 1:430518‑M2/45‑1 (MQ=255) gtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAg < 1:7631304‑M2/46‑1 (MQ=255) gtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAg > 1:4360542‑M2/6‑51 (MQ=255) tacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAgg < 1:10086518‑M2/47‑1 (MQ=255) acaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGa < 1:6947797‑M2/48‑1 (MQ=255) acaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGa < 1:2457415‑M2/48‑1 (MQ=255) caATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGAc < 1:7756569‑M2/49‑1 (MQ=255) caATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGAc < 1:623781‑M2/49‑1 (MQ=255) caATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGAc < 1:3718083‑M2/49‑1 (MQ=255) caATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGAc > 1:3542840‑M2/3‑51 (MQ=255) caATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGAc < 1:7325544‑M2/49‑1 (MQ=255) aATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACg < 1:4709775‑M2/50‑1 (MQ=255) aATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACg < 1:10452762‑M2/50‑1 (MQ=255) aTTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACgg < 1:6799903/51‑1 (MQ=255) aTTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACgg < 1:4448559/51‑1 (MQ=255) | TGCTGCTGAAGCAACAGTAATAATGCCCATTGTGATAAACGTATAGTGGAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGG > REL606/3901085‑3901185 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |