New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3630716 | NA (NA) | 80 (0.840) | 52/80 | NT | NA | intergenic (‑171/‑305) | ldrD/yhjV | toxic polypeptide, small/predicted transporter |
? | REL606 | = 3652533 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region |
GCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAGCAC > REL606/3630697‑3630766 | gCAACATTGCGCCTCCCCGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt < 1:5167440/51‑1 (MQ=9) gCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt > 1:9674549/1‑51 (MQ=31) gCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt < 1:6317008/51‑1 (MQ=31) gCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt < 1:372756/51‑1 (MQ=31) gCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGAt < 1:7398232/51‑1 (MQ=31) cAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGAtt > 1:1818805/1‑51 (MQ=33) cAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGAtt > 1:10246663/1‑51 (MQ=33) cAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGAtt > 1:7774662/1‑51 (MQ=33) aaCATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTg > 1:3139687/1‑51 (MQ=35) aaCATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTg < 1:2795228/51‑1 (MQ=35) aaCATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTg > 1:2435712/1‑51 (MQ=35) aCATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGc > 1:6654003/1‑51 (MQ=38) cATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCt > 1:3858145/1‑51 (MQ=40) aTTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCtt > 1:8731948/1‑51 (MQ=255) aTTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCtt > 1:10098783/1‑51 (MQ=255) ttGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCttt < 1:7067225/51‑1 (MQ=255) ttGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCttt > 1:9519099/1‑51 (MQ=255) tGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCtttt < 1:6190500/51‑1 (MQ=255) tGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCtttt > 1:10373691/1‑51 (MQ=255) tGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCtttt < 1:1710810/51‑1 (MQ=255) gcgcCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCttttt < 1:8177446/51‑1 (MQ=255) cgcCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTa < 1:1245441/51‑1 (MQ=255) cgcCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTa > 1:1924666/1‑51 (MQ=255) cgcCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTa < 1:10112023/51‑1 (MQ=255) gcCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTAc > 1:5760219/1‑51 (MQ=255) gcCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTAc < 1:2433324/51‑1 (MQ=255) ccTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACt > 1:8314479/1‑51 (MQ=255) cTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTg > 1:10066783/1‑51 (MQ=255) cTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTg > 1:8597866/1‑51 (MQ=255) cTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTg < 1:8578379/51‑1 (MQ=255) tCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGt < 1:5432404/51‑1 (MQ=255) tCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGt > 1:8204246/1‑51 (MQ=255) tCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGt > 1:7882114/1‑51 (MQ=255) tCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGt < 1:8145952/51‑1 (MQ=255) cACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTc > 1:7251054/1‑51 (MQ=255) cACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTc < 1:1054840/51‑1 (MQ=255) cACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTc < 1:8539037/51‑1 (MQ=255) aCCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCa < 1:5820030/51‑1 (MQ=255) aCCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCa < 1:1469008/51‑1 (MQ=255) aCCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCa < 1:9672640/51‑1 (MQ=255) ccGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAg < 1:10386145/51‑1 (MQ=255) cGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAGc > 1:5211195/1‑51 (MQ=255) ggAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAGCa < 1:4372062/51‑1 (MQ=255) ggAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAGCa < 1:401643/51‑1 (MQ=255) ggAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAGCa > 1:1426441/1‑51 (MQ=255) gAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAGCAc < 1:6971700/51‑1 (MQ=255) | GCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAGCAC > REL606/3630697‑3630766 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |