New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 664688 =NA (NA)76 (0.840) 46/76 NT 100% noncoding (1/1443 nt) IS150 repeat region
?REL606 1270660 = 0 (0.000)intergenic (‑167/+238) ldrC/chaA toxic polypeptide, small/calcium/sodium:proton antiporter

Only 100 of 132 total aligned reads displayed.

GCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT  >  REL606/664638‑664734
                                                  |                                              
gcCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGtttt                                                <  1:7737717/51‑1 (MQ=255)
  cGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGt                                              >  1:1346673/1‑51 (MQ=255)
   ggAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTa                                             >  1:7564617/1‑51 (MQ=255)
      aaCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg                                          >  1:3179947/1‑51 (MQ=255)
      aaCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg                                          >  1:5930927/1‑51 (MQ=255)
      aaCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg                                          <  1:7311820/51‑1 (MQ=255)
       aCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGc                                         >  1:7654488/1‑51 (MQ=255)
       aCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGc                                         >  1:7248628/1‑51 (MQ=255)
        cTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCa                                        >  1:5809229/1‑51 (MQ=255)
        cTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCa                                        <  1:9813076/51‑1 (MQ=255)
         ttATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCAc                                       >  1:6919833/1‑51 (MQ=255)
          tATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCAcc                                      <  1:534665/51‑1 (MQ=255)
          tATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCAcc                                      <  1:260355/51‑1 (MQ=255)
            ttGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCa                                    >  1:491474/1‑51 (MQ=255)
            ttGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCa                                    >  1:6033390/1‑51 (MQ=255)
            ttGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCa                                    >  1:6417056/1‑51 (MQ=255)
             tGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAt                                   <  1:3137553/51‑1 (MQ=255)
              ggCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAtt                                  <  1:7380003/51‑1 (MQ=255)
              ggCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAtt                                  <  1:6073404/51‑1 (MQ=255)
               gCGTGAGCAGAAAGCCCGACACGCTCCAGTAGTTTTGTACTGCACCCAttt                                 <  1:9175510/51‑1 (MQ=255)
               gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAttt                                 <  1:841024/51‑1 (MQ=255)
               gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAttt                                 <  1:5156819/51‑1 (MQ=255)
               gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAttt                                 <  1:10789131/51‑1 (MQ=255)
                cGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAtttt                                <  1:4335551/51‑1 (MQ=255)
                cGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAtttt                                <  1:1794736/51‑1 (MQ=255)
                 gTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttg                               <  1:2302418/51‑1 (MQ=255)
                 gTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttg                               >  1:10500759/1‑51 (MQ=255)
                 gTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttg                               >  1:2629645/1‑51 (MQ=255)
                  tGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttgt                              >  1:8774118/1‑51 (MQ=255)
                  tGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttgt                              <  1:2862066/51‑1 (MQ=255)
                   gAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttgtt                             >  1:9139848/1‑51 (MQ=255)
                    aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttgttg                            <  1:2015750/51‑1 (MQ=255)
                    aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttgttg                            <  1:9260646/51‑1 (MQ=255)
                    aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttg                               <  1:9367013/48‑1 (MQ=255)
                      cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCCCCCATTTTGTTGGa                          <  1:6787169/51‑1 (MQ=255)
                      cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGa                          >  1:854482/1‑51 (MQ=255)
                      cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGa                          <  1:1472421/51‑1 (MQ=255)
                      cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGa                          <  1:1724280/51‑1 (MQ=255)
                       aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGAc                         >  1:1576582/1‑51 (MQ=255)
                       aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGAc                         <  1:3176720/51‑1 (MQ=255)
                       aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGAc                         >  1:1137852/1‑51 (MQ=255)
                       aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGAc                         >  1:5020569/1‑51 (MQ=255)
                       aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGAc                         <  1:7670704/51‑1 (MQ=255)
                       aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGAc                         <  1:8125929/51‑1 (MQ=255)
                        gAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACg                        >  1:9748214/1‑51 (MQ=255)
                         aaaGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGa                       <  1:8595891/51‑1 (MQ=255)
                          aaGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGAt                      >  1:9816415/1‑51 (MQ=255)
                          aaGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGAt                      <  1:10912976/51‑1 (MQ=255)
                          aaGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGAt                      >  1:3989889/1‑51 (MQ=255)
                          aaGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGAt                      >  1:5340184/1‑51 (MQ=255)
                           aGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATg                     <  1:3388397/51‑1 (MQ=255)
                           aGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATg                     <  1:4953629/51‑1 (MQ=255)
                            gCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGa                    <  1:2905413/51‑1 (MQ=255)
                            gCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGa                    <  1:6745744/51‑1 (MQ=255)
                            gCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGa                    <  1:5832387/51‑1 (MQ=255)
                             cccGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGaa                   <  1:10304378/51‑1 (MQ=255)
                             cccGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGaa                   <  1:4940975/51‑1 (MQ=255)
                              ccGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGaaa                  >  1:3438690/1‑51 (MQ=255)
                               cGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATg                     <  1:378030/47‑1 (MQ=255)
                               cGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAAt                 >  1:10267223/1‑51 (MQ=255)
                               cGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAAt                 >  1:10345756/1‑51 (MQ=255)
                               cGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAAt                 >  1:8545417/1‑51 (MQ=255)
                               cGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAAt                 <  1:4447727/51‑1 (MQ=255)
                                gACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATg                <  1:6055303/51‑1 (MQ=255)
                                gACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATg                <  1:88017/51‑1 (MQ=255)
                                gACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATg                <  1:10388427/51‑1 (MQ=255)
                                 acacGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATgg               <  1:7730562/51‑1 (MQ=255)
                                 acacGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATgg               <  1:6505489/51‑1 (MQ=255)
                                  cacGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGa              <  1:140006/51‑1 (MQ=255)
                                  cacGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGa              <  1:9500505/51‑1 (MQ=255)
                                   acGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa             <  1:10660444/51‑1 (MQ=255)
                                   acGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa             >  1:10387803/1‑51 (MQ=255)
                                   acGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa             <  1:3956749/51‑1 (MQ=255)
                                   acGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa             <  1:9603653/51‑1 (MQ=255)
                                   acGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa             >  1:10167392/1‑51 (MQ=255)
                                   acGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa             >  1:2429815/1‑51 (MQ=255)
                                    cGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt            >  1:228421/1‑51 (MQ=255)
                                    cGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt            <  1:211750/51‑1 (MQ=255)
                                    cGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt            <  1:6104209/51‑1 (MQ=255)
                                    cGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt            >  1:4671489/1‑51 (MQ=255)
                                    cGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt            <  1:3440521/51‑1 (MQ=255)
                                     gCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa           <  1:776376/51‑1 (MQ=255)
                                     gCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa           <  1:162846/51‑1 (MQ=255)
                                     gCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa           <  1:3790771/51‑1 (MQ=255)
                                     gCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa           <  1:2931479/51‑1 (MQ=255)
                                       tCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGc         >  1:7939392/1‑51 (MQ=255)
                                        ccAGCAGTTTTGTACTGCCCCCATTTTGTTGGACGATGAAATgg               <  1:10026278/44‑1 (MQ=255)
                                          agcagTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc      >  1:4207797/1‑51 (MQ=255)
                                           gcagTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt     >  1:10753891/1‑51 (MQ=255)
                                            cagTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa    <  1:5801812/51‑1 (MQ=40)
                                            cagTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa    <  1:3734207/51‑1 (MQ=40)
                                            cagTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa    >  1:5975618/1‑51 (MQ=40)
                                             agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa   <  1:2464478/51‑1 (MQ=38)
                                             agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa   >  1:846150/1‑51 (MQ=38)
                                             agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa   >  1:4159412/1‑51 (MQ=38)
                                             agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa   <  1:8240273/51‑1 (MQ=38)
                                             agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa   >  1:4822649/1‑51 (MQ=38)
                                             agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa   <  1:4796390/51‑1 (MQ=38)
                                             agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa   >  1:10039403/1‑51 (MQ=38)
                                              gTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat  >  1:6261556/1‑51 (MQ=35)
                                                  |                                              
GCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT  >  REL606/664638‑664734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.