| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 588495 = | NA (NA) | 185 (2.050) | 70/76 | NT | NA | noncoding (1/1977 nt) | IS150 | repeat region |
| ? | REL606 | 589936 = | NA (NA) | noncoding (387/768 nt) | IS1 | repeat region | |||||
TGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑AAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA > REL606/588452‑588542 | tGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACt < 1:6482558/51‑1 (MQ=38) gACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTg < 1:5593376/51‑1 (MQ=38) aCGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGc < 1:3108/51‑1 (MQ=38) aCGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGc > 1:4135153/1‑51 (MQ=38) aCGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGc < 1:5427084/51‑1 (MQ=38) aCGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGc > 1:946775/1‑51 (MQ=38) cGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCa < 1:10609400/51‑1 (MQ=38) cGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCa > 1:8810932/1‑51 (MQ=38) cGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCa > 1:1267536/1‑51 (MQ=38) cGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCa < 1:1931148/51‑1 (MQ=38) gATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCAc < 1:3056368/51‑1 (MQ=38) gATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCAc < 1:6610207/51‑1 (MQ=38) gATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCAc < 1:3203610/51‑1 (MQ=38) ttGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCAccc < 1:10870336/51‑1 (MQ=38) ttGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCAccc > 1:9954815/1‑51 (MQ=38) tGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCa > 1:6270721/1‑51 (MQ=38) gAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCAt > 1:10406524/1‑51 (MQ=38) gAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCAt < 1:4506448/51‑1 (MQ=38) gAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCAt < 1:10640069/51‑1 (MQ=38) gAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCAt < 1:6548699/51‑1 (MQ=38) aGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCAtt > 1:4246516/1‑51 (MQ=38) aGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCAtt < 1:9893766/51‑1 (MQ=38) gTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCAttt < 1:9170642/51‑1 (MQ=37) gTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCAttt < 1:3616509/51‑1 (MQ=37) tCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCAtttt > 1:3348436/1‑51 (MQ=37) tCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCAtttt < 1:4161240/51‑1 (MQ=37) tCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCAttt < 1:2913422/50‑1 (MQ=37) aTGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCAcc > 1:10486858/1‑43 (MQ=25) aTGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTttgt > 1:7551526/1‑51 (MQ=25) tGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTttgtt < 1:10269523/51‑1 (MQ=25) tGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTttgtt < 1:5084315/51‑1 (MQ=25) gCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTttgttg > 1:3824507/1‑51 (MQ=25) gCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTttgttg < 1:7742483/51‑1 (MQ=25) gCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTttgttg > 1:1152440/1‑51 (MQ=25) gCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTttgttg < 1:10622870/51‑1 (MQ=25) aGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGa < 1:2340265/51‑1 (MQ=21) aGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGa > 1:6127233/1‑51 (MQ=21) aGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGa < 1:5053658/51‑1 (MQ=21) gAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGAc < 1:8281706/51‑1 (MQ=21) gAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGAc > 1:9845396/1‑51 (MQ=21) gAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGAc > 1:3295407/1‑51 (MQ=21) gAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGAc > 1:9532317/1‑51 (MQ=21) aaaaaaaCGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACg > 1:10938373/1‑51 (MQ=21) aaaaaaaCGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACg < 1:3814326/51‑1 (MQ=21) aaaaaaaCGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACg < 1:5490599/51‑1 (MQ=21) aaaaaaaCGGGTTCAGATTCAAAAGTTGTACTGCTCCCATTTTGTTGGACg < 1:8945973/51‑1 (MQ=18) aaaaaaCTGGTTCAGCTTCAAAAGTTGTACTGCGCCCATTTTGTTGGACGa < 1:10249759/51‑1 (MQ=18) aaaaaaCGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTttgtt > 1:9521821/1‑45 (MQ=21) aaaaaaCGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGa < 1:4143697/51‑1 (MQ=18) aaaaCGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATg > 1:5386907/1‑51 (MQ=18) aaaCGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGa < 1:507884/51‑1 (MQ=18) aaCGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGaa > 1:8430086/1‑51 (MQ=17) aaCGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGaa < 1:8868692/51‑1 (MQ=17) aaCGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGaa > 1:783393/1‑51 (MQ=17) aCGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGaaa > 1:640268/1‑51 (MQ=17) cGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:3714578/1‑51 (MQ=17) cGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:120574/1‑51 (MQ=17) cGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:10687610/1‑51 (MQ=17) cGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAAt < 1:8220364/51‑1 (MQ=17) gggTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATg > 1:1139627/1‑51 (MQ=14) ggTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATgg < 1:2732124/51‑1 (MQ=14) ggTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATgg > 1:594425/1‑51 (MQ=14) gTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGa > 1:3115700/1‑51 (MQ=14) ttCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa > 1:2695409/1‑51 (MQ=14) ttCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa < 1:8445595/51‑1 (MQ=14) ttCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa > 1:4812376/1‑51 (MQ=14) ttCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa > 1:7034265/1‑51 (MQ=14) tCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt < 1:9846471/51‑1 (MQ=11) tCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt < 1:10754860/51‑1 (MQ=11) ttcaaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc > 1:239554/6‑51 (MQ=255) ttcaaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc > 1:8037780/6‑51 (MQ=255) tcaaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 1:1391320/5‑51 (MQ=255) tcaaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 1:453866/5‑51 (MQ=255) tcaaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 1:5943614/5‑51 (MQ=255) tcaaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 1:3387241/5‑51 (MQ=255) tcaaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 1:4013048/5‑51 (MQ=255) tcaaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 1:1524742/5‑51 (MQ=255) caaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt > 1:10002506/4‑51 (MQ=255) caaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt > 1:9567759/4‑51 (MQ=255) caaaaGTTGTACTGCACCCATTTTGTTGGAC‑ATGaaa > 1:48404/4‑37 (MQ=14) aaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa < 1:1393829/49‑1 (MQ=25) aaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa < 1:8405393/49‑1 (MQ=25) aaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa < 1:7297661/50‑1 (MQ=25) aaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa < 1:322700/50‑1 (MQ=25) aaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa < 1:7064929/50‑1 (MQ=25) aaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat < 1:1615859/51‑1 (MQ=35) aaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat > 1:1340283/1‑51 (MQ=35) aGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata > 1:1377426/1‑51 (MQ=33) aGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata > 1:6091518/1‑51 (MQ=33) aGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata > 1:10139177/1‑51 (MQ=33) aGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata < 1:989630/51‑1 (MQ=33) aGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata > 1:4449561/1‑51 (MQ=33) | TGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑AAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA > REL606/588452‑588542 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |