Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 3,894,997 Δ6,138 bp 100% IS150‑mediated rbsD[yieO] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 3893584–3894993 3901134 6142–7551 56 [51] [0] 227 insJ‑5–[yieO] insJ‑5,insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3894996NA (NA)133 (1.440) 64/78 NT 100% noncoding (1443/1443 nt) IS150 repeat region
?REL606 3901135 = 0 (0.000)coding (1285/1428 nt) yieO predicted multidrug or homocysteine efflux system

Only 100 of 343 total aligned reads displayed.

TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3894946‑3894996
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACG  >  REL606/3901135‑3901184
                                                                                                     
TCAGACCTATATGCCTCGTGTTTAACTGTGCAACTTTTTGGGGTCAGTACA                                                    <  1:436092/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCGGTACA                                                    <  1:8534424/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:10102506/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    >  1:10151755/1‑51
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:10210879/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:5808674/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:10406332/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:6234914/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:10692516/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:537090/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    >  1:6366442/1‑51
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:9661959/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:9394363/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    >  1:4747407/1‑51
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    >  1:1589419/1‑51
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:9035358/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    >  1:9025384/1‑51
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    >  1:8731700/1‑51
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:10078677/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:8207998/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    >  1:2395699/1‑51
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:7950711/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:2589314/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    >  1:6555207/1‑51
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    >  1:9777267/1‑51
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:2842290/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    >  1:2942612/1‑51
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:6580390/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:6160051/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:4187477/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:3286480/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    >  1:7797394/1‑51
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    >  1:7528878/1‑51
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    >  1:348154/1‑51
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:7459384/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    >  1:6878690/1‑51
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:3669976/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:7017774/51‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:6911145/51‑1
 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA                                                   >  1:7838007/1‑51
 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA                                                   >  1:7217240/1‑51
 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA                                                   <  1:3150197/51‑1
 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA                                                   >  1:3027738/1‑51
 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA                                                   <  1:10577919/51‑1
 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA                                                   <  1:7874152/51‑1
 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA                                                   >  1:4592836/1‑51
 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA                                                   <  1:6296859/51‑1
 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA                                                   >  1:6397055/1‑51
 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA                                                   >  1:5019385/1‑51
 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA                                                   >  1:10921117/1‑51
  AGACCTATATGCCTCGTTTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                                    <  1:280284/49‑1
  AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAT                                                  >  1:5102758/1‑51
  AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAT                                                  >  1:9246762/1‑51
  AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAT                                                  <  1:10796898/51‑1
  AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAT                                                  <  1:10316881/51‑1
  AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAT                                                  >  1:3940426/1‑51
    ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTG                                                <  1:5150747/51‑1
    ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTG                                                <  1:7677286/51‑1
     CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGT                                               <  1:8505249/51‑1
     CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGT                                               >  1:4821262/1‑51
       TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTC                                             >  1:2469116/1‑51
       TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTC                                             >  1:8662527/1‑51
        ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCG                                            <  1:445264/51‑1
          ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGAC                                          >  1:1359648/1‑51
          ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGAC                                          <  1:3768990/51‑1
           TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACA                                         >  1:9165914/1‑51
           TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACA                                         >  1:3997347/1‑51
             CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGT                                       >  1:1634323/1‑51
             CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGT                                       <  1:6772186/51‑1
              CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTC                                      >  1:10032813/1‑51
              CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTC                                      <  1:8964265/51‑1
                 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTT                                   <  1:6697684/51‑1
                 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTT                                   >  1:4117531/1‑51
                 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTT                                   >  1:1510519/1‑51
                 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTT                                   >  1:2167406/1‑51
                 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCG                                     <  1:5924077/49‑1
                  TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTG                                  <  1:5584793/51‑1
                  TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTG                                  >  1:3589928/1‑51
                   GTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGT                                 <  1:5190254/51‑1
                   GTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGT                                 <  1:2720035/51‑1
                          TGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCC                          >  1:8900051/1‑51
                            TCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCATTCCAT                        <  1:7046487/51‑1
                               AACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCC                     >  1:856957/1‑51
                               AACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCC                     <  1:6966147/51‑1
                                ACTTTTTGGGGTCTGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCT                    >  1:2020045/1‑51
                                 CTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTT                   <  1:1782991/51‑1
                                   TTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCA                 <  1:6820270/51‑1
                                   TTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCA                 <  1:9091118/51‑1
                                      TGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAA              <  1:1218835/51‑1
                                       GGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAA             <  1:3434831/51‑1
                                        GGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAAC            >  1:224536/1‑51
                                         GGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACG           <  1:667689/51‑1
                                          GTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGC          <  1:7164628/51‑1
                                            CAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGA        >  1:355920/1‑51
                                            CAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGA        <  1:3383007/51‑1
                                             AGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAA       <  1:430518/51‑1
                                              GTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAG      <  1:3240021/51‑1
                                                ACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGA    >  1:8293478/1‑51
                                                 CAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGAC   <  1:7325544/51‑1
                                                 CAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGAC   <  1:9467693/51‑1
                                                                                                     
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3894946‑3894996
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACG  >  REL606/3901135‑3901184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.