New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3652533NA (NA)224 (2.360) 73/80 NT NA noncoding (1443/1443 nt) IS150 repeat region
?REL606 = 3697156 NA (NA)coding (280/4134 nt) rhsA rhsA element core protein RshA

Only 100 of 310 total aligned reads displayed.

CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3652484‑3652533
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACTGCTGTAG  <  REL606/3697156‑3697107
                                                                                                    
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                                   >  1:3306822/1‑51
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                                   <  1:4952103/51‑1
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                                   >  1:453853/1‑51
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                                   <  1:4239579/51‑1
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                                   <  1:10478240/51‑1
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                                   <  1:7366445/51‑1
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                                   <  1:3925726/51‑1
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                                   >  1:7971180/1‑51
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                                   >  1:5783255/1‑51
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                                   <  1:899202/51‑1
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                                   <  1:2564691/51‑1
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                                   <  1:1604466/51‑1
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                                   <  1:9050093/51‑1
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                                   <  1:9355968/51‑1
 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG                                                  <  1:2986256/51‑1
  GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGC                                                 <  1:5699111/51‑1
  GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGC                                                 <  1:1102477/51‑1
  GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGC                                                 <  1:9616442/51‑1
   ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGgc                                                <  1:6579718/51‑3
   ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCC                                                <  1:7733450/51‑1
   ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCC                                                <  1:4628777/51‑1
   ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCC                                                >  1:10419961/1‑51
     CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGA                                              <  1:5299728/51‑1
      TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAG                                             <  1:1067598/51‑1
      TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAG                                             <  1:8467240/51‑1
      TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAG                                             >  1:484739/1‑51
      TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAG                                             >  1:6851850/1‑51
      TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAG                                             <  1:2292112/51‑1
      TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAG                                             <  1:1074968/51‑1
      TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGA                                              >  1:10531528/1‑50
      TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG                                                   >  1:10260080/1‑45
       ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGG                                            <  1:5029604/51‑1
       ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGG                                            >  1:9492295/1‑51
         ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCT                                          <  1:9925618/51‑1
         ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCT                                          >  1:2178039/1‑51
         ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCT                                          >  1:2926520/1‑51
           GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCC                                        >  1:591656/1‑51
            CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCC                                       >  1:5629739/1‑51
               ctTGTTTAACTTTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCAC                                    >  1:7650082/3‑51
               CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCAC                                    >  1:8854182/1‑51
                GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACC                                   >  1:7588829/1‑51
                 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCG                                  >  1:5866111/1‑51
                 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCG                                  <  1:9153296/51‑1
                  GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGG                                 >  1:8199529/1‑51
                   TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGC                                <  1:1699844/51‑1
                    TTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGC                                >  1:629068/1‑50
                    TTAACTGTCCAACTTTTTGGGGTCAGTACAGACCGAGGCTCCCCACCGGCG                               >  1:6011119/1‑51
                         TGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGC                          <  1:3825646/51‑1
                         TGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGC                          <  1:1194333/51‑1
                         TGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGC                          >  1:9653678/1‑51
                         TGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGC                          <  1:4458953/51‑1
                         TGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGC                          <  1:3359635/51‑1
                         TGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGC                              >  1:4056730/1‑47
                         TGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCC                                        >  1:8354960/1‑37
                          GTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCG                         <  1:5493381/51‑1
                          GTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCG                         <  1:7234491/51‑1
                           TCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGT                        <  1:10030798/51‑1
                           TCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGT                        <  1:521141/51‑1
                           TCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGT                        <  1:6903394/51‑1
                           TCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGT                        <  1:2681454/51‑1
                             CAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGG                           >  1:6071400/1‑46
                             CAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGG                           >  1:3945833/1‑46
                              AACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTT                     <  1:7804199/51‑1
                               ACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTT                    <  1:649847/51‑1
                               ACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTT                    <  1:4352445/51‑1
                               ACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTT                    <  1:9412595/51‑1
                               ACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGGTTTT                    >  1:3417416/1‑51
                                CTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTG                   <  1:418003/51‑1
                                CTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTG                   <  1:2407489/51‑1
                                CTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTT                    >  1:9536940/1‑50
                                 TTTTTGGGGTCAGTACAGGCCGAGGCTCCCCCCCGG                                 >  1:2242246/1‑36
                                 TTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGT                  <  1:3715711/51‑1
                                 TTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGT                  <  1:7010321/51‑1
                                 TTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGG                           >  1:1346286/1‑42
                                  TTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTC                 >  1:9440849/1‑51
                                   TTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTT                    >  1:6733207/1‑47
                                   TTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGGTTTT                    >  1:2771475/1‑47
                                   TTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGGTTTT                    >  1:3059833/1‑47
                                     TGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGG              <  1:7861288/51‑1
                                     TGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGG              <  1:2055756/51‑1
                                      GGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGT             <  1:3124031/51‑1
                                      GGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGT             <  1:8594963/51‑1
                                      GGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGT             >  1:8065192/1‑51
                                       GGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTT                    >  1:7084722/1‑43
                                        GGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAA           <  1:1989731/51‑1
                                        GGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGG              >  1:7532519/1‑48
                                        GGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGG                           >  1:3625091/1‑35
                                         GTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAAC          <  1:7448946/51‑1
                                         GTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAAC          >  1:6399073/1‑51
                                         GTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAAC          >  1:9805109/1‑51
                                         GTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTT                    >  1:8713092/1‑41
                                          TCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACT         <  1:2835715/51‑1
                                          TCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACT         <  1:9720527/51‑1
                                          TCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACT         <  1:4923233/51‑1
                                           CAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGGTTTTGTCCGGTAACTG        >  1:4822441/1‑51
                                             GTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACTGCT      <  1:10342530/51‑1
                                              TACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACTGCTG     >  1:8919041/1‑51
                                                CAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACTGCTGTA   <  1:9229403/51‑1
                                                 AGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACTGCTGTAG  <  1:7910874/51‑1
                                                 AGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACTGCTGTAG  >  1:4691676/1‑51
                                                                                                    
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3652484‑3652533
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACTGCTGTAG  <  REL606/3697156‑3697107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.