New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3652533 | NA (NA) | 224 (2.360) | 73/80 | NT | NA | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | = 3697156 | NA (NA) | coding (280/4134 nt) | rhsA | rhsA element core protein RshA |
Only 100 of 310 total aligned reads displayed.
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3652484‑3652533 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACTGCTGTAG < REL606/3697156‑3697107 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG > 1:3306822/1‑51 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:4952103/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG > 1:453853/1‑51 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:4239579/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:10478240/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:7366445/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:3925726/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG > 1:7971180/1‑51 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG > 1:5783255/1‑51 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:899202/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:2564691/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:1604466/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:9050093/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 1:9355968/51‑1 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG < 1:2986256/51‑1 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGC < 1:5699111/51‑1 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGC < 1:1102477/51‑1 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGC < 1:9616442/51‑1 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGgc < 1:6579718/51‑3 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCC < 1:7733450/51‑1 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCC < 1:4628777/51‑1 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCC > 1:10419961/1‑51 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGA < 1:5299728/51‑1 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAG < 1:1067598/51‑1 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAG < 1:8467240/51‑1 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAG > 1:484739/1‑51 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAG > 1:6851850/1‑51 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAG < 1:2292112/51‑1 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAG < 1:1074968/51‑1 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGA > 1:10531528/1‑50 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG > 1:10260080/1‑45 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGG < 1:5029604/51‑1 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGG > 1:9492295/1‑51 ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCT < 1:9925618/51‑1 ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCT > 1:2178039/1‑51 ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCT > 1:2926520/1‑51 GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCC > 1:591656/1‑51 CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCC > 1:5629739/1‑51 ctTGTTTAACTTTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCAC > 1:7650082/3‑51 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCAC > 1:8854182/1‑51 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACC > 1:7588829/1‑51 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCG > 1:5866111/1‑51 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCG < 1:9153296/51‑1 GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGG > 1:8199529/1‑51 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGC < 1:1699844/51‑1 TTAACTGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGC > 1:629068/1‑50 TTAACTGTCCAACTTTTTGGGGTCAGTACAGACCGAGGCTCCCCACCGGCG > 1:6011119/1‑51 TGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGC < 1:3825646/51‑1 TGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGC < 1:1194333/51‑1 TGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGC > 1:9653678/1‑51 TGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGC < 1:4458953/51‑1 TGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGC < 1:3359635/51‑1 TGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGC > 1:4056730/1‑47 TGTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCC > 1:8354960/1‑37 GTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCG < 1:5493381/51‑1 GTCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCG < 1:7234491/51‑1 TCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGT < 1:10030798/51‑1 TCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGT < 1:521141/51‑1 TCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGT < 1:6903394/51‑1 TCCAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGT < 1:2681454/51‑1 CAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGG > 1:6071400/1‑46 CAACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGG > 1:3945833/1‑46 AACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTT < 1:7804199/51‑1 ACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTT < 1:649847/51‑1 ACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTT < 1:4352445/51‑1 ACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTT < 1:9412595/51‑1 ACTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGGTTTT > 1:3417416/1‑51 CTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTG < 1:418003/51‑1 CTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTG < 1:2407489/51‑1 CTTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTT > 1:9536940/1‑50 TTTTTGGGGTCAGTACAGGCCGAGGCTCCCCCCCGG > 1:2242246/1‑36 TTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGT < 1:3715711/51‑1 TTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGT < 1:7010321/51‑1 TTTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGG > 1:1346286/1‑42 TTTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTC > 1:9440849/1‑51 TTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTT > 1:6733207/1‑47 TTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGGTTTT > 1:2771475/1‑47 TTTGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGGTTTT > 1:3059833/1‑47 TGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGG < 1:7861288/51‑1 TGGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGG < 1:2055756/51‑1 GGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGT < 1:3124031/51‑1 GGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGT < 1:8594963/51‑1 GGGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGT > 1:8065192/1‑51 GGGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTT > 1:7084722/1‑43 GGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAA < 1:1989731/51‑1 GGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGG > 1:7532519/1‑48 GGTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGG > 1:3625091/1‑35 GTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAAC < 1:7448946/51‑1 GTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAAC > 1:6399073/1‑51 GTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAAC > 1:9805109/1‑51 GTCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTT > 1:8713092/1‑41 TCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACT < 1:2835715/51‑1 TCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACT < 1:9720527/51‑1 TCAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACT < 1:4923233/51‑1 CAGTACAGGCCGAGGCTCCCCACCGGCGCGGGCGGTTTTGTCCGGTAACTG > 1:4822441/1‑51 GTACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACTGCT < 1:10342530/51‑1 TACAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACTGCTG > 1:8919041/1‑51 CAGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACTGCTGTA < 1:9229403/51‑1 AGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACTGCTGTAG < 1:7910874/51‑1 AGGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACTGCTGTAG > 1:4691676/1‑51 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3652484‑3652533 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCCGAGGCTCCCCACCGGCGCGGGCGTTTTTGTCCGGTAACTGCTGTAG < REL606/3697156‑3697107 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |