| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3651091 = | NA (NA) | 122 (1.290) | 65/80 | NT | NA | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3697154 = | NA (NA) | coding (278/4134 nt) | rhsA | rhsA element core protein RshA | |||||
Only 100 of 210 total aligned reads displayed.
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3651140‑3651091‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAAC > REL606/3697154‑3697203 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:1763208/1‑51CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:8939367/1‑51CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:250372/1‑51CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:4985228/1‑51CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG < 1:2868800/51‑1CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:1518868/1‑51CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG < 1:4450811/51‑1CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:4046524/1‑51CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG < 1:8617663/51‑1CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG < 1:374474/51‑1CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:5804992/1‑51CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:8065838/1‑51CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:1176783/1‑51 ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGC > 1:4702610/1‑51 ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGC > 1:8830883/1‑51 ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGC > 1:3437738/1‑51 ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGC > 1:1973711/1‑51 ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGC > 1:10355928/1‑51 ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGC > 1:4591337/1‑51 ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGC > 1:8763323/1‑51 ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGC > 1:7839324/1‑51 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTATAGCC < 1:6355815/51‑1 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCC < 1:6152512/51‑1 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCC > 1:10557636/1‑51 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCC < 1:5228435/51‑1 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCC > 1:10594611/1‑51 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCC < 1:8495038/51‑1 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCC > 1:1147366/1‑51 ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCC < 1:4187350/51‑1 ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCC < 1:3349068/51‑1 ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCC > 1:6759731/1‑51 ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCC < 1:3867341/51‑1 ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCC < 1:6235517/51‑1 ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCC > 1:3166157/1‑51 ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCC > 1:2956317/1‑51 ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCC > 1:1553794/1‑51 TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCC < 1:4979275/51‑1 TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCC > 1:3708384/1‑51 TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCC > 1:3488912/1‑51 TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCG < 1:3692773/51‑1 GGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCT > 1:5875994/1‑51 GGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTG < 1:1474395/51‑1 GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGG < 1:2051332/51‑1 CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGA < 1:3470380/51‑1 CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGA > 1:7372243/1‑51 CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGA > 1:10657593/1‑51 TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAA > 1:10823325/1‑51 TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAA > 1:2421700/1‑51 TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA > 1:3777017/1‑51 TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA > 1:6285992/1‑51 TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA > 1:968995/1‑51 TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA < 1:440646/51‑1 TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA > 1:4645430/1‑51 TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA > 1:2214157/1‑51 TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAAT > 1:9447529/1‑51 CCATTTCATCGTCCAACAAAATGGGTGCAGTATAGCCCCGGCTGGAAAATG > 1:3762289/1‑51 CATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGC < 1:1116319/51‑1 CATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGC > 1:1578468/1‑51 CATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGC > 1:8993779/1‑51 CATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGC > 1:8904175/1‑51 ATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCC < 1:1189583/51‑1 TTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCT < 1:5920162/51‑1 TTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCT > 1:1632562/1‑51 TTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA > 1:341480/1‑46 TTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTG > 1:10025494/1‑51 TTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTG < 1:10287664/51‑1 TCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGC < 1:3278723/51‑1 TCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGC > 1:10917537/1‑51 TCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGA > 1:86768/1‑51 TCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGA > 1:1257943/1‑51 CGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGAT > 1:5631787/1‑51 GTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATA > 1:1313036/1‑51 GTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATA < 1:824209/51‑1 TCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATAT < 1:10812235/51‑1 CCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATC < 1:9579617/51‑1 ACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGC < 1:10542395/51‑1 AAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCTGCTT > 1:5446230/1‑51 AAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTT > 1:271976/1‑51 AAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTT > 1:156689/1‑51 AATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTAC < 1:7182272/51‑1 ATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACA > 1:2540505/1‑51 ATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACA < 1:2972187/51‑1 TGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAG > 1:6815700/1‑51 TGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAG < 1:5486082/51‑1 TGGGTGCAGAACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAG < 1:10008367/51‑1 GGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGC > 1:6545004/1‑51 GGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCT < 1:5522607/51‑1 GGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCT < 1:8796346/51‑1 TGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGC > 1:8529714/1‑51 GCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCG > 1:5132735/1‑51 CAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGC > 1:4609225/1‑51 CAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGC < 1:9093883/51‑1 AGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCG < 1:4501060/51‑1 GTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGA < 1:7704824/51‑1 TACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGAT < 1:1428035/51‑1 ACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATA < 1:9220798/51‑1 ACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATA > 1:7513876/1‑51 ACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATA < 1:5419565/51‑1 AGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAAC > 1:2916499/1‑51 AGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAAC < 1:7745398/51‑1 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3651140‑3651091‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAAC > REL606/3697154‑3697203 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |