New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2775877 | NA (NA) | 93 (0.980) | 56/80 | NT | 100% | noncoding (1/1443 nt) | IS150 | repeat region |
? | REL606 | 3048489 = | 0 (0.000) | intergenic (‑318/+37) | yghK/glcB | glycolate transporter/malate synthase |
Only 100 of 107 total aligned reads displayed.
TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2775830‑2775877 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCT > REL606/3048489‑3048538 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCC > 1:4701703/1‑51 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCC > 1:8540915/1‑51 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCC > 1:3251594/1‑51 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCC < 1:7544307/51‑1 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCC > 1:8101632/1‑51 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCC > 1:842703/1‑51 TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGAC > 1:3932758/1‑51 TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGAC > 1:8700622/1‑51 AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACA > 1:9606499/1‑51 AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGAGCAGTACACCCGACA > 1:3929755/1‑51 GGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAAT < 1:8400901/51‑1 GGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAAT > 1:6280303/1‑51 GGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATA > 1:4903894/1‑51 GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAA > 1:1161465/1‑51 CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAA < 1:6104952/51‑1 CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAA < 1:5837434/51‑1 TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAA > 1:6001012/1‑51 TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAA < 1:9466813/51‑1 TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAA > 1:5063446/1‑51 ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAAC > 1:2909754/1‑51 ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGAC < 1:2395206/43‑1 TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACT > 1:8507847/1‑51 TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACT > 1:10494985/1‑51 TTCCATTTCATCGTCCAAAAAAATGGGTGCAGTACCCCCGACAATAAAAC < 1:212517/50‑1 TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTT > 1:4317614/1‑51 TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTT > 1:2062578/1‑51 TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTT < 1:9554621/51‑1 TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTT < 1:6083710/51‑1 CCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTG < 1:8327409/51‑1 CCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTG < 1:10511328/51‑1 CCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTG > 1:7693670/1‑51 CCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTG > 1:8022679/1‑51 CATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGC < 1:3532889/51‑1 ATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCC > 1:4541369/1‑51 TTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCG < 1:5832546/51‑1 TTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCG > 1:8066889/1‑51 TTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCG > 1:2298240/1‑51 TTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCG > 1:5199827/1‑51 TTTCATCGTCCAACAAAATGGGCGCAGTACACCCGACAATAAAACTTGCCG > 1:5669652/1‑51 TTTCATCATCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCG < 1:9170720/51‑1 TTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGG > 1:7846337/1‑51 TTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGG < 1:10136125/51‑1 TTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGG > 1:2429026/1‑51 TTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGG > 1:10480865/1‑51 TCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGG < 1:5160819/51‑1 TCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGG > 1:2620182/1‑51 ATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGC > 1:7880051/1‑51 ATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGC > 1:6350574/1‑51 ATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGC > 1:276954/1‑51 TCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCT > 1:8509425/1‑51 CGTCCAACAAAATGGGTGCAGTCCACCCGACAATAAAACTTGCCGGGGCTT < 1:10131650/51‑1 CGTCCAACAAAATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTT < 1:3678147/51‑1 CGTCCAACAAAATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTT < 1:10437272/51‑1 CGTCCAACAAAATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTT < 1:5429444/51‑1 CGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTT < 1:10930468/51‑1 CGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTT > 1:7142849/1‑51 GTCCAACAAAATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTTT < 1:2307379/51‑1 GTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTT > 1:3887979/1‑51 TCCAACAAAATGGGTGCCGTACACCCGACAATAAAACTTGCCGGGGCTTTT < 1:5846656/51‑1 TCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTT > 1:558104/1‑51 CCAACAAAATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTTTTT < 1:4777443/51‑1 CCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTT < 1:5735777/51‑1 CCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTT > 1:4371418/1‑51 CAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTT > 1:5152649/1‑51 CAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTT > 1:2267690/1‑51 AACAAAATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTTTTTT < 1:2746079/50‑1 AACAAAATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTTTT < 1:1727449/48‑1 AACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTG > 1:3511907/1‑51 CAAAATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTTTTTTGAC < 1:10608608/51‑1 CAAAATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTTTTTTGAC < 1:3330591/51‑1 CAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGAC > 1:6992486/1‑51 CAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGAC > 1:10850940/1‑51 AAAATGGGTGCAGTCCCCCCGACAATAAAACTTGCCGGGGCTTTTTTGACG < 1:2287748/51‑1 AAAATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTTTTTTGACG < 1:5626630/51‑1 AAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACG > 1:7274781/1‑51 AAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACG < 1:5661440/51‑1 AAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACG < 1:10341498/51‑1 AATGGGTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCT < 1:2430649/51‑1 ATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTA < 1:4471812/51‑1 ATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTA > 1:1548756/1‑51 ATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTA < 1:7965617/51‑1 TGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTAT < 1:4433391/51‑1 TGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTAT > 1:3484880/1‑51 GGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATT < 1:5800658/51‑1 GGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTA < 1:8449603/51‑1 GGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTA < 1:10945978/51‑1 GTGCAGTACCCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAA < 1:1315958/51‑1 GTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAA > 1:6956794/1‑51 GTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAA < 1:8478664/51‑1 TGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAAT < 1:7336539/51‑1 GCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTA < 1:3537074/48‑1 CAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGA < 1:820641/51‑1 CAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGA > 1:3848410/1‑51 AGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGAC > 1:1313882/1‑51 TACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTT > 1:3667487/1‑51 TACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTT > 1:2733626/1‑51 ACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTT < 1:4094056/51‑1 CACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTC < 1:10394040/51‑1 CACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATT > 1:5125880/1‑41 ACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCT > 1:93190/1‑51 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2775830‑2775877 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCT > REL606/3048489‑3048538 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |