New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2774435 =NA (NA)92 (1.050) 55/74 NT NA noncoding (1443/1443 nt) IS150 repeat region
?REL606 = 2822512 NA (NA)noncoding (443/768 nt) IS1 repeat region

Only 100 of 312 total aligned reads displayed.

GAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2774488‑2774435
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  REL606/2822512‑2822463
                                                                                                        
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      >  1:5064242/1‑51
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:101409/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      >  1:10244931/1‑51
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:9853892/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:967459/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:9505800/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      >  1:8955496/1‑51
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:8842434/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      >  1:4286045/1‑51
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      >  1:10769607/1‑51
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:10884783/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:875456/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      >  1:8557268/1‑51
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      >  1:1512653/1‑51
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      >  1:8064772/1‑51
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:1706368/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:7970997/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:1948341/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:7884326/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:4744580/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:2303605/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      >  1:7173210/1‑51
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:7083526/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      >  1:2576494/1‑51
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      >  1:2675881/1‑51
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:7003330/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:6939109/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:6880195/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:2953937/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      >  1:6606402/1‑51
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:3155631/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      >  1:6264397/1‑51
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      >  1:5007695/1‑51
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:3563791/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTA                                                      <  1:5114395/51‑1
 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGCTCAGTA                                                      >  1:3317555/1‑51
     AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGT                                                  <  1:3951962/51‑1
       ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCT                                                <  1:4500720/51‑1
        CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTC                                               >  1:10735128/1‑51
         CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCC                                              >  1:534122/1‑51
         CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCC                                              >  1:7632592/1‑51
          TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCG                                             >  1:9915966/1‑51
           ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGG                                            >  1:4615615/1‑51
              TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAG                                         <  1:1154455/51‑1
              TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAG                                         <  1:9721935/51‑1
               GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGA                                        >  1:8320110/1‑51
               GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGA                                        >  1:5550788/1‑51
                CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGAC                                       <  1:5140443/51‑1
                 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACG                                      >  1:10325714/1‑51
                    GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTT                                   >  1:3048814/1‑51
                     TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTG                                  >  1:8601219/1‑51
                     TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTG                                  <  1:10403533/51‑1
                      GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGT                                 >  1:5426309/1‑51
                      GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGT                                 >  1:2860155/1‑51
                       TTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTT                                <  1:5981628/51‑1
                        TTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGT                                    <  1:10039068/46‑1
                        TTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGT                                    <  1:2912652/46‑1
                         TAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGC                              <  1:2523402/51‑1
                            CTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCA                           >  1:4855574/1‑51
                            CTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCA                           <  1:3989193/51‑1
                            CTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTCGTTGCGCA                           >  1:374768/1‑51
                             TGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCAC                          >  1:6024819/1‑51
                              GTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACG                         >  1:7758026/1‑51
                               TCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGT                        <  1:7323842/51‑1
                                 CAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTAT                      >  1:5814944/1‑51
                                  AACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATT                     <  1:4806088/51‑1
                                   ACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTC                    <  1:10589651/51‑1
                                    CTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCG                   >  1:7809299/1‑51
                                    CTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCG                   <  1:8189125/51‑1
                                     TTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGG                  <  1:1401994/51‑1
                                      TTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGT                 >  1:4020039/1‑51
                                               CAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACT        <  1:8623915/51‑1
                                                 GTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTAT      <  1:5503382/51‑1
                                                 GTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTAT      <  1:243944/51‑1
                                                   ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    >  1:2756838/1‑51
                                                   ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    <  1:7420436/51‑1
                                                   ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    <  1:4412017/51‑1
                                                   ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    >  1:4239281/1‑51
                                                   ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    <  1:3254621/51‑1
                                                   ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    <  1:6460067/51‑1
                                                   ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    >  1:1050923/1‑51
                                                   ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    <  1:564313/51‑1
                                                    CAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGNC   <  1:6807730/51‑1
                                                    CAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGC   >  1:5764938/1‑51
                                                    CAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGC   <  1:529702/51‑1
                                                    CAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGC   >  1:8483212/1‑51
                                                     AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  1:6082638/51‑1
                                                     AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  1:6319309/51‑1
                                                     AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  1:1791295/51‑1
                                                     AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:1603480/1‑51
                                                     AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:881119/1‑51
                                                     AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  1:10681437/51‑1
                                                     AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:3819691/1‑51
                                                     AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  1:9150665/51‑1
                                                     AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:9309093/1‑51
                                                     AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:2170198/1‑51
                                                     AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:223036/1‑51
                                                     AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:4188675/1‑51
                                                     AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  1:752414/51‑1
                                                     AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:4368982/1‑51
                                                                                                        
GAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2774488‑2774435
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  REL606/2822512‑2822463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.