Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 1,974,040 Δ8,273 bp 100% IS1‑mediated [yedU][yeeI] [yedU], yedV, yedW, yedX, yedY, yedZ, yodA, yodB, serU, [yeeI]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 1973302–1974039 1982312 8274–9011 53 [50] [1] 107 insA‑13–[yeeI] insA‑13,insB‑13,yedU,yedV,yedW,yedX,yedY,yedZ,yodA,yodB,serU,[yeeI]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1974039NA (NA)80 (0.840) 50/80 NT 100% noncoding (768/768 nt) IS1 repeat region
?REL606 1982313 = 0 (0.000)coding (664/798 nt) yeeI hypothetical protein

Only 100 of 105 total aligned reads displayed.

CGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1973991‑1974039
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTT  >  REL606/1982313‑1982362
                                                                                                   
CGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAG                                                  <  1:6196500/51‑1
 GGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGC                                                 >  1:182212/1‑51
 GGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGC                                                 <  1:1188058/51‑1
  GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCG                                                <  1:5028880/51‑1
  GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCG                                                >  1:233420/1‑51
  GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCG                                                <  1:7487782/51‑1
  GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCG                                                >  1:7719100/1‑51
  GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCG                                                <  1:9635782/51‑1
   GCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGC                                               >  1:9631739/1‑51
   GCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGC                                               >  1:2751678/1‑51
    CATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCC                                              >  1:3329234/1‑51
    CATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCC                                              >  1:1008426/1‑51
     ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCC                                             <  1:1515630/51‑1
     ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCC                                             >  1:2804356/1‑51
     ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCC                                             >  1:4682073/1‑51
      TTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCC                                            >  1:9140425/1‑51
       TATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCA                                           >  1:2798851/1‑51
       TATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCA                                           <  1:10724868/51‑1
        ATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAG                                          <  1:1452184/51‑1
         TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGA                                         >  1:6217084/1‑51
         TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGA                                         >  1:808947/1‑51
         TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGA                                         >  1:222290/1‑51
          CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAA                                        <  1:5723445/51‑1
          CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAA                                        >  1:332875/1‑51
          CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAA                                        <  1:3245647/51‑1
          CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAA                                        >  1:10799224/1‑51
          CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAA                                        <  1:5767743/51‑1
           TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAAC                                       >  1:3202435/1‑51
            GAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACT                                      >  1:5903996/1‑51
             AACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTT                                     >  1:4822861/1‑51
              ACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTT                                    <  1:9613597/51‑1
              ACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTT                                    <  1:9383069/51‑1
              ACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTT                                    >  1:2374903/1‑51
              ACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTT                                    >  1:4748143/1‑51
               CATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTT                                   <  1:10324971/51‑1
               CATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTT                                   <  1:1147173/51‑1
               CATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTT                                   >  1:6019114/1‑51
               CATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTT                                   <  1:2172790/51‑1
                ATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTT                                  <  1:10011911/51‑1
                ATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTT                                  >  1:843407/1‑51
                ATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTT                                  <  1:1250196/51‑1
                ATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTT                                  >  1:83351/1‑51
                 TAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTG                                 <  1:8881256/51‑1
                  AAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGC                                >  1:4068990/1‑51
                    AACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTC                              >  1:8189839/1‑51
                     ACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCC                             >  1:8166622/1‑51
                     ACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCC                             >  1:9538703/1‑51
                      CACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCT                            >  1:7586879/1‑51
                        CTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCG                          >  1:1882364/1‑51
                         TNTCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGT                         >  1:4817775/1‑51
                         TATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGT                         >  1:3149665/1‑51
                            CAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTC                      >  1:5771546/1‑51
                            CAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTC                      >  1:2423343/1‑51
                             AATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCC                     >  1:3963911/1‑51
                             AATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCC                     >  1:6566975/1‑51
                              ATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCC                    >  1:6148846/1‑51
                               TAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCT                   >  1:5946799/1‑51
                               TAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCT                   >  1:1116612/1‑51
                               TAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCT                   >  1:10313765/1‑51
                                AAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTT                  <  1:9630167/51‑1
                                AAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTT                  <  1:4651380/51‑1
                                AAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTT                  >  1:3389779/1‑51
                                AAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTT                  <  1:58994/51‑1
                                 AGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTC                 <  1:8211499/51‑1
                                 AGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTC                 >  1:6222643/1‑51
                                 AGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTC                 >  1:2365318/1‑51
                                   TTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCAT               <  1:9068711/51‑1
                                   TTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCAT               >  1:6388930/1‑51
                                   TTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCAT               >  1:5848261/1‑51
                                    TGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATT              <  1:2822013/51‑1
                                    TGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATT              >  1:5214777/1‑51
                                     GGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTG             >  1:7454965/1‑51
                                     GGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTG             >  1:6179273/1‑51
                                     GGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTG             <  1:746082/51‑1
                                       AGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTG           >  1:3433585/1‑51
                                       AGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTG           <  1:8461355/51‑1
                                       AGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTG           >  1:6781420/1‑51
                                        GTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGG          >  1:7868897/1‑51
                                         TCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGC         >  1:719945/1‑51
                                         TCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGC         <  1:6895830/51‑1
                                          CATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCA        >  1:5824365/1‑51
                                          CATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCA        >  1:3440301/1‑51
                                           ATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAA       <  1:9775617/51‑1
                                           ATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAA       <  1:1680598/51‑1
                                           ATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAA       >  1:9173008/1‑51
                                           ATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAA       >  1:1924762/1‑51
                                            TTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAAC      <  1:5024645/51‑1
                                            TTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAAC      <  1:9725976/51‑1
                                            TTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAAC      >  1:3736944/1‑51
                                            TTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAAC      <  1:365447/51‑1
                                            TTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAAC      <  1:10503869/51‑1
                                            TTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAAC      >  1:7117172/1‑51
                                             TACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACG     >  1:10187262/1‑51
                                             TACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACG     >  1:7500417/1‑51
                                             TACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACG     >  1:3819920/1‑51
                                             TACCAGCGCACCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACG     >  1:1011860/1‑51
                                              ACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGT    >  1:10692928/1‑51
                                                CAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTT  <  1:4709880/51‑1
                                                CAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTT  <  1:5733089/51‑1
                                                CAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTT  <  1:6097765/51‑1
                                                                                                   
CGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1973991‑1974039
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTT  >  REL606/1982313‑1982362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.