New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 664688 =NA (NA)76 (0.840) 46/76 NT 100% noncoding (1/1443 nt) IS150 repeat region
?REL606 1270660 = 0 (0.000)intergenic (‑167/+238) ldrC/chaA toxic polypeptide, small/calcium/sodium:proton antiporter

TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/664735‑664688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACT  >  REL606/1270660‑1270709
                                                                                                  
TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCG                                                 <  1:3909997/51‑1
TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCG                                                 <  1:8067436/51‑1
TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCG                                                 >  1:6443433/1‑51
 ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGG                                                <  1:9190785/51‑1
 ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGG                                                >  1:2999551/1‑51
  TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGA                                               >  1:2674218/1‑51
  TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGA                                               <  1:598785/51‑1
  TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGA                                               >  1:3581754/1‑51
   TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGAT                                              >  1:4808198/1‑51
   TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGAT                                              >  1:4997346/1‑51
   TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGAT                                              >  1:32496/1‑51
    AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATA                                             >  1:10944157/1‑51
    AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATA                                             <  1:8897151/51‑1
    AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATA                                             <  1:2909832/51‑1
    AGGGGCTATTCCATTTCATCGTCCAACAAAATGAGTGCAGTACACCGGATA                                             <  1:5189533/51‑1
     GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAA                                            >  1:4214405/1‑51
       GGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATT                                          <  1:9330070/51‑1
        GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTC                                         <  1:371521/51‑1
        GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTC                                         >  1:3871252/1‑51
         CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCC                                        >  1:1872073/1‑51
         CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCC                                        >  1:2622124/1‑51
          TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCG                                       >  1:2499836/1‑51
            TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGC                                     >  1:1351183/1‑51
            TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGC                                     >  1:6332799/1‑51
             TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCT                                    >  1:2069882/1‑51
             TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCT                                    >  1:7488566/1‑51
             TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCT                                    <  1:5893378/51‑1
               CATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTG                                  >  1:2693509/1‑51
               CATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTG                                  >  1:6207797/1‑51
                ATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGG                                 <  1:7627867/51‑1
                ATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGG                                 <  1:2385052/51‑1
                ATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGG                                 <  1:9279856/51‑1
                ATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGG                                 >  1:5891853/1‑51
                 TTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT                                <  1:10636019/51‑1
                 TTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT                                >  1:2463806/1‑51
                 TTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTG                                  >  1:8000671/1‑49
                    CATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTG                             >  1:7662601/1‑51
                    CATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTG                             <  1:5430631/51‑1
                    CATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTG                             <  1:6747031/51‑1
                      TCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGA                           <  1:1584411/51‑1
                      TCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGA                           <  1:686418/51‑1
                      TCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGG                            >  1:2410500/1‑50
                       CGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGAT                          <  1:2191972/51‑1
                       CGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGAT                          >  1:6337651/1‑51
                       CGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGAT                          >  1:7441566/1‑51
                       CGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGAT                          <  1:8436489/51‑1
                       CGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGAT                          <  1:2882684/51‑1
                       CGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGAT                          <  1:1394243/51‑1
                        GTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATA                         >  1:7557204/1‑51
                        GTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATA                         >  1:3744139/1‑51
                         TCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATAC                        >  1:278686/1‑51
                         TCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATAC                        >  1:7579193/1‑51
                          CCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACT                       >  1:2493555/1‑51
                          CCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACT                       <  1:6738358/51‑1
                          CCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACT                       >  1:2027805/1‑51
                           CAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTA                      >  1:2990183/1‑51
                           CAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTA                      <  1:10640982/51‑1
                            AACAAAATGGGTGTAGTACACCGGATAATTCCGGCTTGGTGTGGATACTAC                     >  1:5797969/1‑51
                             ACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACT                    <  1:7671847/51‑1
                              CAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTT                   <  1:546828/51‑1
                              CAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTT                   >  1:2914021/1‑51
                              CAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTT                   >  1:8386380/1‑51
                              CAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTT                   >  1:6342948/1‑51
                               AAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTC                  >  1:6198809/1‑51
                               AAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTC                  <  1:5035722/51‑1
                               AAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTC                  <  1:2183015/51‑1
                               AAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTC                  >  1:5937568/1‑51
                               AAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTC                  <  1:7296056/51‑1
                                AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCT                 <  1:7802506/51‑1
                                AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCT                 >  1:369134/1‑51
                                AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCT                 <  1:3156557/51‑1
                                 AATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTC                >  1:569586/1‑51
                                 AATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTC                >  1:5009054/1‑51
                                  ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCA               <  1:3002090/51‑1
                                  ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCA               <  1:6024898/51‑1
                                  ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCA               >  1:8796808/1‑51
                                   TGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAA              >  1:1749466/1‑51
                                    GGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAAT             <  1:740396/51‑1
                                     GGTGCAGTACTCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATT            <  1:9611421/51‑1
                                     GGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATT            <  1:3962932/51‑1
                                      GTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTC           <  1:8944735/51‑1
                                       TGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCA          >  1:808909/1‑51
                                        GCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCAT         <  1:10257527/51‑1
                                        GCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCAT         <  1:8856942/51‑1
                                         CAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATC        >  1:1203317/1‑51
                                         CAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATC        >  1:9152818/1‑51
                                         CAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATC        <  1:4710227/51‑1
                                          AGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCT       <  1:4828175/51‑1
                                          AGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCT       >  1:8278633/1‑51
                                          AGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCT       <  1:2220891/51‑1
                                           GTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTT      <  1:7996196/51‑1
                                            TACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTC     >  1:4388699/1‑51
                                             ACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCA    >  1:9661029/1‑51
                                             ACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCA    >  1:5535656/1‑51
                                             ACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCA    <  1:1509715/51‑1
                                             ACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCA    >  1:6806397/1‑51
                                             ACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCA    <  1:1113458/51‑1
                                               ACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACT  >  1:1163673/1‑51
                                               ACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACT  >  1:2349202/1‑51
                                                                                                  
TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/664735‑664688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACT  >  REL606/1270660‑1270709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.