| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 589939 | NA (NA) | 95 (1.030) | 51/78 | NT | NA | noncoding (384/768 nt) | IS1 | repeat region |
| ? | REL606 | = 590471 | NA (NA) | noncoding (1977/1977 nt) | IS150 | repeat region | |||||
Only 100 of 181 total aligned reads displayed.
CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/589890‑589939‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC < REL606/590471‑590424 CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATGGCCCCACTGTT > 1:7701856/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:5384186/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:5388834/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:10603823/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:8785844/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:8684173/51‑1CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:8644186/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:8498657/51‑1CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:1271418/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:8448833/51‑1CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:1762205/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:8288296/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:8232992/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:8020183/51‑1CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:7731791/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:9905414/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:7472636/51‑1CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:7439521/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:666591/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:2936545/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:6545979/51‑1CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:6073160/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:6051893/51‑1CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:5897532/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:546230/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:8961747/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:4872839/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:4341160/51‑1CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:3790025/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:3805877/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACAGTT < 1:7223651/51‑1 GTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTG > 1:5079989/1‑51 GTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTG > 1:5215899/1‑51 GTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTG > 1:6061225/1‑51 GTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:3311889/50‑1 TAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGT > 1:6217122/1‑51 TAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGT > 1:7337733/1‑51 AAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTA > 1:8157905/1‑51 AAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:10325350/1‑48 AAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:197797/48‑1 AAAACACCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:2085874/48‑1 AACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACT > 1:3243968/1‑51 CAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGA > 1:5665728/1‑51 CAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGA > 1:8604462/1‑51 AGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGAC > 1:3648127/1‑51 CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCC < 1:8190053/51‑1 CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCC < 1:3265290/51‑1 AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCA > 1:7569954/1‑51 GCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAA < 1:6692318/51‑1 GCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAA < 1:3453363/51‑1 CGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAA > 1:2488914/1‑51 CGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAA < 1:7504521/51‑1 GCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAA < 1:9413324/51‑1 TGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAG < 1:6820837/51‑1 TGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAG > 1:318990/1‑51 TGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAG < 1:10912033/51‑1 GGCGCGATTTAGCCCCGACATAGCCCCACTGTTGT < 1:908342/35‑1 GGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:283043/33‑1 CGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTG > 1:9518963/1‑51 CGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGT < 1:911831/49‑1 CGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGA > 1:4662828/1‑51 GATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGAC > 1:7813643/1‑51 GATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGAC > 1:4191653/1‑51 GATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGAC > 1:5041862/1‑51 ATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACA < 1:9804132/51‑1 TTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAG < 1:7100542/51‑1 TTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGT < 1:10114446/51‑1 TAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTT < 1:8422785/51‑1 TAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTT < 1:10870902/51‑1 TAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTT < 1:7186740/51‑1 TAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTT > 1:163338/1‑51 AGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTA > 1:5782367/1‑51 AGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTA < 1:2194637/51‑1 CCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTA < 1:2291252/49‑1 CCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC > 1:6843340/1‑51 CCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:7914113/51‑1 CCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:8553838/51‑1 CCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:9521034/51‑1 CCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:3015070/51‑1 CCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA > 1:93519/1‑51 GACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACG < 1:9160359/51‑1 ACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA < 1:5179754/51‑1 CATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG > 1:4615632/1‑51 CATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG < 1:9625365/51‑1 CATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG > 1:2724732/1‑51 ATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG > 1:4075087/1‑51 ATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG > 1:3911119/1‑51 TAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGC > 1:2355617/1‑51 AGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA > 1:4481380/1‑51 GCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCAT < 1:9957154/51‑1 GCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCAT < 1:10060634/51‑1 CCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA < 1:4683894/51‑1 CCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATAT > 1:6307411/1‑51 CCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATAT > 1:10728985/1‑51 CCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA < 1:4970688/51‑1 CCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA < 1:3521667/51‑1 CCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA > 1:5841224/1‑51 ACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG < 1:7999599/51‑1 CTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT > 1:1233344/1‑51 TGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC > 1:5567093/1‑51 CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/589890‑589939‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC < REL606/590471‑590424 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |