Predicted mutation
evidence seq id position mutation annotation gene description
RA REL606 4,628,460 T→G T3P (ACC→CCC)  arcA ← DNA‑binding response regulator in two‑component regulatory system with ArcB or CpxA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*REL6064,628,4600TG100.0% 320.7 / NA 84T3P (ACC→CCC) arcADNA‑binding response regulator in two‑component regulatory system with ArcB or CpxA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (41/43);  total (41/43)

CGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAG  >  REL606/4628413‑4628505
                                               |                                             
cGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTg                                            <  1:3590011/51‑1 (MQ=255)
cGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTg                                            >  1:493808/1‑51 (MQ=255)
  tgtTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCa                                          >  1:5442915/1‑51 (MQ=255)
  tgtTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCa                                          >  1:4225474/1‑51 (MQ=255)
  tgtTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCa                                          <  1:1056889/51‑1 (MQ=255)
  tgtTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCa                                          <  1:2608121/51‑1 (MQ=255)
  tgtTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCa                                          <  1:6764539/51‑1 (MQ=255)
   gtTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCAt                                         >  1:1417301/1‑51 (MQ=255)
   gtTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCAt                                         <  1:1129609/51‑1 (MQ=255)
    ttGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATg                                        >  1:6271608/1‑51 (MQ=255)
    ttGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATg                                        >  1:1763900/1‑51 (MQ=255)
     tGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCt                                             <  1:6688264/45‑1 (MQ=255)
     tGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCt                                             <  1:5610044/45‑1 (MQ=255)
     tGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGt                                       >  1:2922316/1‑51 (MQ=255)
     tGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGt                                       >  1:4640373/1‑51 (MQ=255)
      gCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGtt                                      <  1:4983595/51‑1 (MQ=255)
      gCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGtt                                      <  1:618216/51‑1 (MQ=255)
        gtgtTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTg                                    <  1:7231488/51‑1 (MQ=255)
        gtgtTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTg                                    <  1:5661363/51‑1 (MQ=255)
          gtTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCt                                  >  1:6218854/1‑51 (MQ=255)
           ttACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTa                                 <  1:5442709/51‑1 (MQ=255)
           ttACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTa                                 <  1:1405376/51‑1 (MQ=255)
           ttACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTa                                 <  1:4069030/51‑1 (MQ=255)
           ttACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTa                                 <  1:6865410/51‑1 (MQ=255)
             aCCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTAcc                               <  1:5290391/51‑1 (MQ=255)
             aCCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTAcc                               >  1:4416700/1‑51 (MQ=255)
             aCCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTAcc                               >  1:3535064/1‑51 (MQ=255)
               cAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTa                             <  1:271017/51‑1 (MQ=255)
               cAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTa                             >  1:2214437/1‑51 (MQ=255)
               cAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTa                             <  1:963332/51‑1 (MQ=255)
                aaCTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTaa                            <  1:1263707/51‑1 (MQ=255)
                 aCTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTaaa                           >  1:5900712/1‑51 (MQ=255)
                  cTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAAt                          >  1:7182877/1‑51 (MQ=255)
                   tCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAAtt                         <  1:4215287/51‑1 (MQ=255)
                   tCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAAtt                         >  1:1446309/1‑51 (MQ=255)
                   tCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAAtt                         >  1:4437504/1‑51 (MQ=255)
                   tCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAAtt                         >  1:4377515/1‑51 (MQ=255)
                    cGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTg                        >  1:3951309/1‑51 (MQ=255)
                    cGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTg                        >  1:2083534/1‑51 (MQ=255)
                     gTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGc                       <  1:2553518/51‑1 (MQ=255)
                      ttttCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGcc                      >  1:2397997/1‑51 (MQ=255)
                       tttCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCa                     <  1:796470/51‑1 (MQ=255)
                       tttCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCa                     <  1:1865067/51‑1 (MQ=255)
                       tttCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCa                     <  1:6226454/51‑1 (MQ=255)
                       tttCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCa                     >  1:3985606/1‑51 (MQ=255)
                       tttCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCa                     <  1:2445525/51‑1 (MQ=255)
                        ttCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCaa                    >  1:5298424/1‑51 (MQ=255)
                        ttCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCaa                    >  1:3092162/1‑51 (MQ=255)
                           aaCGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTa                 <  1:598461/51‑1 (MQ=255)
                           aaCGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTa                 <  1:1170495/51‑1 (MQ=255)
                           aaCGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTa                 >  1:678863/1‑51 (MQ=255)
                           aaCGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTa                 <  1:5250389/51‑1 (MQ=255)
                           aaCGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTa                 <  1:6839389/51‑1 (MQ=255)
                             cGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTaaa               >  1:1038681/1‑51 (MQ=255)
                             cGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTaaa               <  1:1725584/51‑1 (MQ=255)
                             cGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTaaa               <  1:295446/51‑1 (MQ=255)
                              gATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAAt              <  1:5960996/51‑1 (MQ=255)
                                tAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCg            <  1:2567863/51‑1 (MQ=255)
                                tAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCg            <  1:4751083/51‑1 (MQ=255)
                                 aaGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGa           >  1:2505063/1‑51 (MQ=255)
                                 aaGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGa           >  1:6618852/1‑51 (MQ=255)
                                 aaGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGa           >  1:6202331/1‑51 (MQ=255)
                                 aaGAATGTGCGGGGGCTGCAAGTTTGCTACCTAAATTGCCAACTAAATCGa           <  1:6793386/51‑1 (MQ=255)
                                  aGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGaa          <  1:6274650/51‑1 (MQ=255)
                                  aGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGaa          >  1:4987122/1‑51 (MQ=255)
                                   gAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGaaa         >  1:3175663/1‑51 (MQ=255)
                                   gAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGaaa         >  1:1528255/1‑51 (MQ=255)
                                   gAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGaaa         >  1:1790166/1‑51 (MQ=255)
                                    aaTGTGTGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAAc        >  1:7135452/1‑51 (MQ=39)
                                    aaTGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAAc        >  1:4414223/1‑51 (MQ=255)
                                    aaTGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAAc        <  1:2857210/51‑1 (MQ=255)
                                    aaTGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAAc        <  1:4631712/51‑1 (MQ=255)
                                     aTGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACa       <  1:2165632/51‑1 (MQ=255)
                                     aTGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACa       <  1:7243583/51‑1 (MQ=255)
                                     aTGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACa       >  1:5282024/1‑51 (MQ=255)
                                      tgtgCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAg      <  1:6042974/51‑1 (MQ=255)
                                       gtgCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAgg     <  1:1755804/51‑1 (MQ=255)
                                        tgCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGa    >  1:31566/1‑51 (MQ=255)
                                        tgCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGa    >  1:3953040/1‑51 (MQ=255)
                                        tgCGGGGGCTGCATGTTTGCTACCTAAATTACCAACTAAATCGAAACAGGa    >  1:5572744/1‑51 (MQ=38)
                                         gCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGaa   >  1:3995358/1‑51 (MQ=255)
                                          cGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGANg  <  1:186480/51‑1 (MQ=255)
                                          cGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAg  >  1:348554/1‑51 (MQ=255)
                                          cGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAg  >  1:6773580/1‑51 (MQ=255)
                                               |                                             
CGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAG  >  REL606/4628413‑4628505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: