Predicted mutation
evidence seq id position mutation annotation gene description
RA REL606 943,554 A→C intergenic (‑53/+232) infA ← / ← aat translation initiation factor IF‑1/leucyl/phenylalanyl‑tRNA‑protein transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*REL606943,5540AC100.0% 237.5 / NA 62intergenic (‑53/+232)infA/aattranslation initiation factor IF‑1/leucyl/phenylalanyl‑tRNA‑protein transferase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (27/35);  total (27/35)

TCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGG  >  REL606/943506‑943601
                                                |                                               
tCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGt                                               <  1:1933316/51‑1 (MQ=255)
tCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGt                                               <  1:4799288/51‑1 (MQ=255)
 ccTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGtt                                              >  1:3564534/1‑51 (MQ=255)
  ctctGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTc                                             >  1:161377/1‑51 (MQ=255)
   tctGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCt                                            <  1:3271625/51‑1 (MQ=255)
   tctGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCt                                            <  1:2944940/51‑1 (MQ=255)
    ctGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTg                                           >  1:4649603/1‑51 (MQ=255)
    ctGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTg                                           >  1:6106347/1‑51 (MQ=255)
    ctGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTg                                           <  1:6762973/51‑1 (MQ=255)
     tGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGt                                          >  1:4695606/1‑51 (MQ=255)
     tGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGt                                          <  1:1275796/51‑1 (MQ=255)
      ggggTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTa                                         >  1:4525191/1‑51 (MQ=255)
      ggggTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTa                                         <  1:3679163/51‑1 (MQ=255)
       gggTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTaa                                        <  1:2539236/51‑1 (MQ=255)
       gggTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTaa                                        <  1:3036948/51‑1 (MQ=255)
        ggTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTaaa                                       >  1:6537644/1‑51 (MQ=255)
        ggTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTaaa                                       <  1:4004446/51‑1 (MQ=255)
          tATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATa                                     >  1:1025556/1‑51 (MQ=255)
          tATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATa                                     >  1:3883431/1‑51 (MQ=255)
          tATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATa                                     >  1:6709743/1‑51 (MQ=255)
           aTCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATaa                                    <  1:3149489/51‑1 (MQ=255)
           aTCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATaa                                    <  1:416661/51‑1 (MQ=255)
               cTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTaa                                <  1:222142/51‑1 (MQ=255)
                tACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTaaa                               >  1:6815493/1‑51 (MQ=255)
                tACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTaaa                               >  1:6950757/1‑51 (MQ=255)
                tACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTaaa                               <  1:3364054/51‑1 (MQ=255)
                  ccGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTa                                 <  1:6158803/47‑1 (MQ=255)
                  ccGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGa                             <  1:6590573/51‑1 (MQ=255)
                   cGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGAt                            <  1:197481/51‑1 (MQ=255)
                   cGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGAt                            >  1:6282146/1‑51 (MQ=255)
                    gTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGAtt                           >  1:5205481/1‑51 (MQ=255)
                     tAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGAttt                          <  1:3902121/51‑1 (MQ=255)
                      aaTTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTg                         <  1:5020779/51‑1 (MQ=255)
                       aTTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgc                        <  1:626873/51‑1 (MQ=255)
                       aTTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgc                        >  1:7074700/1‑51 (MQ=255)
                       aTTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgc                        <  1:712496/51‑1 (MQ=255)
                       aTTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgc                        >  1:4736071/1‑51 (MQ=255)
                        tttGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgcg                       <  1:4472689/51‑1 (MQ=255)
                         ttGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgcgc                      >  1:4267465/1‑51 (MQ=255)
                          tGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgcgcg                     <  1:1695216/51‑1 (MQ=255)
                           gAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgcgcgc                    >  1:965236/1‑51 (MQ=255)
                           gAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgcgcgc                    >  1:4311362/1‑51 (MQ=255)
                             aCCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTa                  <  1:877298/51‑1 (MQ=255)
                             aCCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTa                  >  1:1149097/1‑51 (MQ=255)
                                ggCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAAt               <  1:3117024/51‑1 (MQ=255)
                                 gCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATc              <  1:3302600/51‑1 (MQ=255)
                                 gCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATc              <  1:2514340/51‑1 (MQ=255)
                                 gCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATc              <  1:252886/51‑1 (MQ=255)
                                  cAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCg             >  1:6117299/1‑51 (MQ=255)
                                   aaGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGc            >  1:3431728/1‑51 (MQ=255)
                                    aGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGca           <  1:2629351/51‑1 (MQ=255)
                                    aGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGca           >  1:1275126/1‑51 (MQ=255)
                                     gATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGcaa          <  1:419451/51‑1 (MQ=255)
                                     gATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGcaa          <  1:7132233/51‑1 (MQ=255)
                                     gATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGcaa          <  1:7131180/51‑1 (MQ=255)
                                       tAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGcaaca        >  1:5065243/1‑51 (MQ=255)
                                       tAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGcaaca        >  1:3304373/1‑51 (MQ=255)
                                        aaTGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGcaacaa       <  1:439808/51‑1 (MQ=255)
                                        aaTGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGcaacaa       >  1:95164/1‑51 (MQ=255)
                                          tGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCaacaaac     <  1:5423557/51‑1 (MQ=255)
                                           gCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCaacaaaca    >  1:4154242/1‑51 (MQ=255)
                                             cGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAgg  <  1:3921877/51‑1 (MQ=255)
                                                |                                               
TCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGG  >  REL606/943506‑943601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: